Input parameters:

  Query = ENSDARP00000054352 (Len=413)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000054352, Len=413):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 ASFNQDTTSLVVGDRNGYRLFSLSSVDRMDCIHRGTESSDVCIAERLFSSSLMVVVSKSTPFTMNIYHFKKGTEICNYSY 80  
WD40-rpts                            (____________________WD 1____________________)(___________

Query       81 SSSILALKLNRQRLIVCLEEALYIHNIKDMKLLKSLLNTPPNPKGKHLMSIRSRSLPGSFTAGEITLYDALSLSPVGVIS 160 
WD40-rpts      _____WD 2________________)(___________________WD 3__________________)   (_______

Query      161 AHASHVAGISFSASGSRMATASEKGTVIRVFSVPDGVRLFEFRRGLKRYVSISSLSFSADEQLLCVSSNTETVHVFKLEH 240 
WD40-rpts      __________WD 4_________________)(____________________WD 5___________________)   

Query      241 HSPNQDSPSWSAYIGKVFSAASTYLPSQVSDMMHQDRAFATVHLSQSGGRNISALSTIQKVPRLLVASSDGHLYIYNVNL 320 
WD40-rpts      (________________WD 6________________)      (______________WD 7_____________)   

Query      321 QDGGDCRLVQKHRLFERADEALVASDLHVETPSYAETVATNTNQDSTPSSSLTGYSEDGGLRRGELIPDHEFEDGPLRLD 400 
WD40-rpts         (_________________WD 8________________)                                      

Query      401 DEQEFPPVSFRNS 413 
WD40-rpts                   

8 WD40-repeats found in QUERY=ENSDARP00000054352 (Len=413):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    23-68       5.31  334.19  0.00195       17.5%     25.96
  WD 2:  Seg  7    69-106      2.91  234.70  0.04195        2.5%     38.60
  WD 3:  Seg 11   107-149      5.97  361.45  0.00084       15.0%     34.44
  WD 4:  Seg 14   153-192      8.37  460.32  3.9e-05       37.5%     54.12
  WD 5:  Seg 18   193-237      6.83  396.81  0.00028       25.0%     50.01
  WD 6:  Seg 21   241-278      4.04  281.57  0.00995       15.0%     -1.20
  WD 7:  Seg 23   285-317      6.34  376.38  0.00053       15.0%     46.62
  WD 8:  Seg 25   324-362      5.64  347.63  0.00129       10.0%     11.16

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   23-68     LSSVDRMDCIHRGTE-SSDVCIAERLFSSSLMVVVSKSTPFT-MNIYH
   WD 2   69-106    FKK------GTEICNYSYSSSILALKLNRQRLIVCL---EEA-LYIHN
   WD 3  107-149    IKD---MKLLKSLLN-TPPNPKGKHLMSIRSRSLPGSFTAGE-ITLYD
   WD 4  153-192    -LS------PVGVIS-AHASHVAGISFSASGSRMATASEKGTVIRVFS
   WD 5  193-237    VPD-GVRLFEFRRGL-KRYVSISSLSFSADEQLLCVSSNTET-VHVFK
   WD 6  241-278    -HS------PNQDSP-SWSAYIGKV-FSAASTYLPSQVSDMM-HQDRA
   WD 7  285-317    -------------SQ-SGGRNISALSTIQKVPRLLVASSDGH-LYIYN
   WD 8  324-362    -GD------CRLVQK-HRLFERADEALVASDLHVETPSYAET-VATNT

   WD40 Template    TGE------CLRTLS-GHTSGVTSVSFSPDGKRLVSGSEDGT-IKVWD