Input parameters:

  Query = ENSDARP00000055337 (Len=323)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000055337, Len=323):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGPVELLHMSVFSQSFSPCGRYLAAGNNYGEIAVFSLSAALSPDASERSQKPILNFTAHDGPVFSLLSTESHLLSAGNGE 80  
WD40-rpts      (_______________WD 1_______________)             (________________WD 2__________

Query       81 ISAWSWAELIKKSTKAAWTRKPNYETSLEIPEINAMIINPKDNNLIVGGGDNNIHIMDMETGTFKSVLKGHTDYIHCLSF 160 
WD40-rpts      ______)            (_________________WD 3________________)   (_________________W

Query      161 KEREGEILSGGEDGAVRIWDSRTNRPVHCIEVFKYEECARPQFGKWISCLATDSDWMLCGGGPSLSLWHLRSMSPTSVFP 240 
WD40-rpts      D 4________________)           (________________WD 5________________)           

Query      241 LSGCQREAVFYQDLIMSVGEGPYVSHCLHGGTVKAQIPCSPSSLNTLALNLKNTEHRVMTVGGSSHQIDVFTNFSYRAFS 320 
WD40-rpts      (_________________WD 6_________________)(___________________WD 7________________

Query      321 LSF 323 
WD40-rpts      __)

7 WD40-repeats found in QUERY=ENSDARP00000055337 (Len=323):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-36       8.76  476.42  2.4e-05       30.0%     41.74
  WD 2:  Seg  4    50-87       6.63  388.39  0.00036       17.5%     47.81
  WD 3:  Seg  8   100-138      7.90  440.80  7.1e-05       17.5%     45.63
  WD 4:  Seg 11   142-180     10.42  545.27  2.8e-06       35.0%     55.24
  WD 5:  Seg 16   192-229      5.62  346.90  0.00131       10.0%     41.40
  WD 6:  Seg 20   241-280      8.66  472.26  2.7e-05       15.0%     29.41
  WD 7:  Seg 24   281-323      2.91  234.79  0.04184       10.0%     35.87

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-36     -------MGPVELLHMSVFSQSFSPCGRYLAAGNNYGEIAVFS
   WD 2   50-87     -QK---PILNFTAHDGPVFSL-LSTESHLLSAGNGEISAWSWA
   WD 3  100-138    -RK---PNYETSLEIPEINAMIINPKDNNLIVGGGDNNIHIMD
   WD 4  142-180    -GT---FKSVLKGHTDYIHCLSFKEREGEILSGGEDGAVRIWD
   WD 5  192-229    -VF---KYEECARPQFGKWISCLATDSDWMLCGG-GPSLSLWH
   WD 6  241-280    LSG---CQREAVFYQDLIMSVGEGPYVSHCLHGGTVKAQIPCS
   WD 7  281-323    PSSLNTLALNLKNTEHRVMTVGGSSHQIDVFTNFSYRAFSLSF

   WD40 Template    TGE---CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD