Input parameters:

  Query = ENSDARP00000056646 (Len=556)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000056646, Len=556):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 ATSSLMRFSFKECCFKPVADEPDIEIEGSLVHKDSEEGQILCAEKEVGRKSKTLFSCITTATQTTINPPREVACQTESQP 80  
WD40-rpts                                                                                      

Query       81 LLVNYSATANQWEIYDFYQEELQKRTSSTKKKIQQIARNKNSIFEKNKIVRFGLSDHDLAMLSTAAKLLEYAVNENINGD 160 
WD40-rpts                                                                                      

Query      161 IIAAQTSDFKHFEDEADEFRGDKGTLLPLWEFQYNKVKSLHVSALCWNKKYNDLFAVGLGSHKFTELECGMLLFYTWRNN 240 
WD40-rpts                                                                                     (

Query      241 NHPEFLFNTDSGVMCVDIHEQKSHLVAVGLFNGNVCVYNLMAKDDQPIYNSMASSGKHSGTVWQVKWWEDDLYGNHTFFS 320 
WD40-rpts      _________________WD 1_________________)           (__________________WD 2_______

Query      321 VSADGRVVSWTLGKYELFSTNIIKLPPMDKVPDDLNNVIVTAGLTLDFHKQKPYHFLVGTEAGKIHKGSTHYTRFIKTYE 400 
WD40-rpts      __________)                                                             (_______

Query      401 AHFRMVSCVRWNPFNPKVFITCGMDWRVNIWDETTDSPVFTFDLKSSVMDVAWAPYSSTVFAAVTADGKVHVFDLSINRF 480 
WD40-rpts      __________WD 3_________________)(__________________WD 4__________________)(_____

Query      481 EALCQQRVVSTKRHLTCIEFNPVHPIIIVGNDRGRVISLKLSPNLRKNPKEEKGKEPSTGAEVEIAKMEKLLILMR 556 
WD40-rpts      _______________WD 5____________________)                                    

5 WD40-repeats found in QUERY=ENSDARP00000056646 (Len=556):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   240-279      3.51  259.49  0.01965       20.0%     46.99
  WD 2:  Seg 14   291-331      4.40  296.62  0.00625       22.5%     41.66
  WD 3:  Seg 20   393-432      4.90  317.12  0.00331       22.5%     46.27
  WD 4:  Seg 24   433-474      3.55  261.25  0.01862       20.0%     45.75
  WD 5:  Seg 28   475-520      4.11  284.54  0.00908       15.0%     57.86

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  240-279    -NN------HPEFLF-NTDSGVMCVDIHEQKSH----LV-AVGLFNGNVCVYN
   WD 2  291-331    S---------MASSG-KHSGTVWQVKWWE-DDLYGNHTF-FSVSADGRVVSWT
   WD 3  393-432    -TR------FIKTYE-AHFRMVSCVRWNPFNPK----VF-ITCGMDWRVNIWD
   WD 4  433-474    ETT------DSPVFTFDLKSSVMDVAWAP-YSS----TVFAAVTADGKVHVFD
   WD 5  475-520    LSINRFEALCQQRVV-STKRHLTCIEFNP-VHP----II-IVGNDRGRVISLK

   WD40 Template    TGE------CLRTLS-GHTSGVTSVSFSP-DGK----RL-VSGSEDGTIKVWD