Input parameters:

  Query = ENSDARP00000058220 (Len=342)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000058220, Len=342):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSLHGKRKEIYKYEAPWTVYAMNWSVRPDKRFRLALGSFVEEYNNKVQLVGLEEESSEFVCRNTFDHPYPTTKIMWIPDT 80  
WD40-rpts                                                           (____________________WD 1__

Query       81 KGVYPDLLATSGDYLRIWRVNDTETRLECLLNNNKNSDFCAPLTSFDWNEVDPNLLGTSSIDTTCTIWGLETGQVLGRVN 160 
WD40-rpts      __________________)           (_________________WD 2________________)           

Query      161 LVSGHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGADGSVRMFDLRHLEHSTIIYEDPQHHPLLRLCWNKQDPNYLATM 240 
WD40-rpts         (__________________WD 3__________________)     (__________________WD 4_______

Query      241 AMDGMEVVILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAADDHQALIWDIQQMPRAIEDPILAYTAEGEINNVQ 320 
WD40-rpts      __________)    (_________________WD 5_________________)(____________________WD 6

Query      321 WASTQPDWIAICYNNCLEILRV 342 
WD40-rpts      ____________________) 

6 WD40-repeats found in QUERY=ENSDARP00000058220 (Len=342):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    54-99       5.01  321.82  0.00286       17.5%     36.47
  WD 2:  Seg 10   111-149      5.77  352.81  0.00109       22.5%     42.21
  WD 3:  Seg 14   164-205      6.72  392.43  0.00032       27.5%     54.29
  WD 4:  Seg 18   211-251      3.61  263.63  0.01731       12.5%     57.74
  WD 5:  Seg 22   256-295      6.95  401.86  0.00024       17.5%     53.23
  WD 6:  Seg 26   296-341      4.95  319.26  0.00310        5.0%     38.89

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   54-99     EESSEFVCRN------TFDHPYPTTKIMWIP-DT---K-GVYPDLLATSGDY-LRIWR
   WD 2  111-149    LNN-----NK------NSDFCAPLTSFDWNEVDP---N-LLGT---SSIDTT-CTIWG
   WD 3  164-205    -GH---VKTQ------LIAHDKEVYDIAFSR-AGGGRD-MFAS---VGADGS-VRMFD
   WD 4  211-251    -HS---TIIY------EDPQHHPLLRLCWNKQDP---N-YLAT---MAMDGMEVVILD
   WD 5  256-295    -CT---PVAR------LNNHRACVNGIAWAP-HS---SCHICT---AADDHQ-ALIWD
   WD 6  296-341    IQQ---MPRAIEDPILAYTAEGEINNVQWAS-TQ---P-DWIA---ICYNNC-LEILR

   WD40 Template    TGE---CLRT------LSGHTSGVTSVSFSP-DG---K-RLVS---GSEDGT-IKVWD