Input parameters:

  Query = ENSDARP00000059208 (Len=400)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000059208, Len=400):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAEIHPRPQTRKPVLLSKIEGFQDVVNTAVIIPKEDGVISVSQDRTIRVWLKRDSGQYWPSVYHTMPVACSCMSFNPET 80  
WD40-rpts                  (_________________WD 1_________________)   (__________________WD 2__

Query       81 RRISVGLENGTVSEFVLSEDYNQMTPARTYQAHQGGVTVVLFVLEMEWVLSTGQDKSFTWHCSESGQQLGTYRTTAWVSG 160 
WD40-rpts      _______________)       (_________________WD 3________________)   (______________

Query      161 LQFDVETRHAFVGDHSGQVTILKLEQDNCSLVTTFKGHTGNVTALCWDPVQRVLFSGSSDHSIIMWDIGGRKGTAIELQG 240 
WD40-rpts      __WD 4________________)     (_________________WD 5________________)(____________

Query      241 HNDKVQGLCYAPHTRQLISCGSDGGIVIWNMDVTRQETPEWLDSDSCQKCEQPFFWNFKQMWDSKKIGLRQHHCRKCGQA 320 
WD40-rpts      _______WD 6__________________)                                    (_____________

Query      321 VCGKCSSKRSTIPLMGFEFEVRVCDSCHDLITDEERAPTATFHDSKHSIVHMQYEPTRGWLLTSGTDKVIKLWDMTPVVS 400 
WD40-rpts      ____WD 7________________)          (_________________WD 8________________)      

8 WD40-repeats found in QUERY=ENSDARP00000059208 (Len=400):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    13-52       8.51  466.19  3.2e-05       27.5%     56.18
  WD 2:  Seg  5    56-96       7.41  420.61  0.00013       27.5%     53.65
  WD 3:  Seg  9   104-142      8.24  455.17  4.6e-05       25.0%     56.73
  WD 4:  Seg 13   146-183      7.10  408.06  0.00020       20.0%     56.72
  WD 5:  Seg 17   189-227      9.52  508.01  8.8e-06       37.5%     55.64
  WD 6:  Seg 21   228-270      9.15  492.45  1.4e-05       30.0%     59.33
  WD 7:  Seg 28   307-345      7.16  410.50  0.00018        7.5%     51.63
  WD 8:  Seg 32   356-394      8.38  460.70  3.8e-05       20.0%     55.37

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   13-52     KP---VLLSKIEGFQDVV--NTAVIIPKEDGVISVSQDRTIRVWL
   WD 2   56-96     -S---GQYWPSVYHTMPVACSCMSFNPETRRISVGLENGTVSEFV
   WD 3  104-142    -M---TPARTYQAHQGGV--TVVLFVLEMEWVLSTGQDKSFTWHC
   WD 4  146-183    -G---QQLGTY-RTTAWV--SGLQFDVETRHAFVGDHSGQVTILK
   WD 5  189-227    -C---SLVTTFKGHTGNV--TALCWDPVQRVLFSGSSDHSIIMWD
   WD 6  228-270    IGGRKGTAIELQGHNDKV--QGLCYAPHTRQLISCGSDGGIVIWN
   WD 7  307-345    -I---GLRQHHCRKCGQA--VCGKCSSKRSTIPLMGFEFEVRVCD
   WD 8  356-394    -R---APTATFHDSKHSI--VHMQYEPTRGWLLTSGTDKVIKLWD

   WD40 Template    TG---ECLRTLSGHTSGV--TSVSFSPDGKRLVSGSEDGTIKVWD