Input parameters:

  Query = ENSDARP00000059344 (Len=443)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000059344, Len=443):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKMRRKMSEPHGEAGNEMPNKKQKLSSDENSNPDLSGDDNDDAVSVESGTHPERPDTPTNTASAPGRKSWGKGKWKSKKC 80  
WD40-rpts                                                 (______________WD 1_____________)____

Query       81 KYSFKCVNSLKEDHGQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTFDCSS 160 
WD40-rpts      ___________________WD 2_______________________)           (_________________WD 3

Query      161 SHPLLAVAGSRGIIRIINHITMQCVKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE 240 
WD40-rpts      _________________)   (_________________WD 4_________________)      (____________

Query      241 VLSADFDLLGEKIMSCGMDHSLKLWRLDSERLQRAIRGSYEYNPSKTNRPFVSQKIHFPDFSTRDIHRNYVDCVRWLGDL 320 
WD40-rpts      _____WD 5________________)   (_____________WD 6____________)______________WD 7__

Query      321 ILSKSCENAIVCWKPGRMEDDIDRIKPNESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHK 400 
WD40-rpts      _____________)(__________________________WD 8__________________________)        

Query      401 AKCTTLTLPRCTSAIRQTSFSRDSSILIAVCDDASIWRWDRLR 443 
WD40-rpts       (_________________WD 9________________)   

9 WD40-repeats found in QUERY=ENSDARP00000059344 (Len=443):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    44-76       6.39  378.80  0.00049       10.0%     32.55
  WD 2:  Seg  4    76-127      4.17  287.01  0.00841       10.0%     52.84
  WD 3:  Seg  9   139-178      6.84  397.23  0.00028       10.0%     39.33
  WD 4:  Seg 12   182-221      8.50  465.69  3.3e-05       27.5%     56.12
  WD 5:  Seg 16   228-266      8.35  459.58  4.0e-05       25.0%     45.75
  WD 6:  Seg 20   270-300      2.95  236.34  0.03991       15.0%     12.37
  WD 7:  Seg 22   298-334      5.90  358.37  0.00092       22.5%     40.93
  WD 8:  Seg 25   335-392      6.10  366.55  0.00071       30.0%     55.52
  WD 9:  Seg 28   402-440      8.12  450.08  5.3e-05       32.5%     48.49

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   44-76     -----------------------VSVESGTHPERPDTP-T--NT----ASAPGRKSWGKGKWK
   WD 2   76-127    KSK--------KCKYSFKCVNSLKEDHGQPLFGVQFNW-H--SKEGDPLVFATVGSNRVTLYE
   WD 3  139-178    SYV----------------DADADENFYTCAWTFDCSS-S--HP----LLAVAGSRGIIRIIN
   WD 4  182-221    -MQ----------------CVKHYVGHGNAINELKFHPRD--PN----LLLSVSKDHALRLWN
   WD 5  228-266    -VA----------------IFGGVEGHRDEVLSADFDL-L--GE----KIMSCGMDHSLKLWR
   WD 6  270-300    -ER----------------LQRAIRGSYEYNPSKTNRP---------------FVSQKIHFPD
   WD 7  298-334    -FP----------------DFSTRDIHRNYVDCVRWL-----GD----LILSKSCENAIVCWK
   WD 8  335-392    PGRMEDDIDRIKPNESNVTILGRFDYSQCDIWYMRFSM-DFWQK----MLALGNQVGKLYVWD
   WD 9  402-440    -KC----------------TTLTLPRCTSAIRQTSFSR-D--SS----ILIAVCDDASIWRWD

   WD40 Template    TGE----------------CLRTLSGHTSGVTSVSFSP-D--GK----RLVSGSEDGTIKVWD