Input parameters:

  Query = ENSDARP00000060301 (Len=496)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000060301, Len=496):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MARGRAQTDSAASKQTKTVNSKKRPNEETPQPSTKKLKAKQQHKSKQKEETYIQASVKWTGGQKKVGQTSILHYIYKSSL 80  
WD40-rpts                                                                                      

Query       81 GQSIHAQLRQCLQEPFIRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVLNKTSFIQGMGPGDA 160 
WD40-rpts                            (_________________WD 1_________________)     (____________

Query      161 ITGMKFNQFNTNQLFVSSIWGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKE 240 
WD40-rpts      _____WD 2_________________)(___________________WD 3___________________)  (______

Query      241 KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSS 320 
WD40-rpts      ___________WD 4_________________)         (________________WD 5_______________) 

Query      321 YDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKF 400 
WD40-rpts                 (____________________WD 6___________________)   (_________________WD 

Query      401 SPTGDVLASGMGFNILIWNREDTLSSVNRKQTIVTGEDVGGRAGGSRSQRSSQQRPSRDRRAAADEAKLKKKLSATETKS 480 
WD40-rpts      7_________________)  (_________________WD 8________________)                    

Query      481 KTKSKTESKTSKSKKK 496 
WD40-rpts                      

8 WD40-repeats found in QUERY=ENSDARP00000060301 (Len=496):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   103-142      7.26  414.38  0.00016       32.5%     54.11
  WD 2:  Seg  8   148-187      6.44  380.59  0.00046       17.5%     56.43
  WD 3:  Seg 12   188-231      7.54  426.06  0.00011       12.5%     52.41
  WD 4:  Seg 16   234-273      8.12  450.28  5.3e-05       32.5%     55.15
  WD 5:  Seg 20   283-319      7.06  406.17  0.00021       20.0%     45.89
  WD 6:  Seg 24   332-376      4.08  283.35  0.00942       15.0%     40.24
  WD 7:  Seg 28   380-419      6.32  375.89  0.00053       27.5%     51.57
  WD 8:  Seg 31   422-460      3.49  258.64  0.02018        7.5%     10.94

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  103-142    -Y----KLHRTASPFDRR--VTSLEWHPTHPTTV-AVG---------SKGGDIILWD
   WD 2  148-187    -K----TSFIQGMGPGDA--ITGMKFNQFNTNQL-FVS---------SIWGATTLRD
   WD 3  188-231    FSGSVIQVFAKTDSWDYW--YCCVDVSV-SRQML-ATG---------DSTGRLLLLG
   WD 4  234-273    -G----HEIFKEKLHKAK--VTHAEFNP-RCDWLMATS---------SVDATVKLWD
   WD 5  283-319    --------YIAEMPHEKP--VNAAYFNPTDSTKL-LTT---------DQRNEIRVYS
   WD 6  332-376    HP----H----RQFQHLT--PIKATWHP-MYDLI-VAGRYPDDQLLLNDKRTIDIYD
   WD 7  380-419    -G----GLVHQLRDPNAAGIISLNKFSP-TGDVL-ASG---------M-GFNILIWN
   WD 8  422-460    -D----TLSSVNRKQTIV--TGEDVGGR-AGGSR-SQR---------SSQQRPSRDR

   WD40 Template    TG----ECLRTLSGHTSG--VTSVSFSP-DGKRL-VSG---------SEDGTIKVWD