Input parameters:

  Query = ENSDARP00000060431 (Len=578)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000060431, Len=578):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAAVGSLVSYGSDSDSENESESPNNPQEIDPDALVHLKPLKSGGVTTVAVLNSAPEVAVKEDVETGVHLDPALKEVSYN 80  
WD40-rpts                                                                                      

Query       81 PTYETMFAPEFGPMNPFRSQQMAAPRNMLSGYAEPAHVNDFMFEQQRRTFSTFGYALDPSVDTSQASSNSYIGAIEEAEK 160 
WD40-rpts                                                                                      

Query      161 NKGLTVFETGPKKSEKRKKVKGGEAADIDNFLGPWAKYQDEKDVAKPSEDEQKELDEITAKRQKRGKNEEESPAEEKTVL 240 
WD40-rpts              (______________________WD 1_____________________)       (_______________

Query      241 HIKDAYDYQGRSYLHIPQDVGINLRSADIPDKCYLPKKQLHVWTGHTKGVSAIRLFPKSGHLLLSCSMDCKIKLWEVYNE 320 
WD40-rpts      ___WD 2__________________)          (_________________WD 3_________________)    

Query      321 RRCVRTFIGHSKAVRDVCFNNSGTQFLSAAYDRYIKLWDSETGQCISRFTNRKVPYCVKFNPDEDKQNLLVAGMSDKKIV 400 
WD40-rpts      (_________________WD 4________________)   (__________________WD 5_______________

Query      401 QWDIRSGEVVQEYDRHLGAVNTITFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLACQSM 480 
WD40-rpts      __)   (_________________WD 6________________)(___________________WD 7___________

Query      481 DNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVVSGDADGKLNIWDWKTTKLYHRIKAHDKVCISALWHPH 560 
WD40-rpts      _______)(_____________________WD 8____________________)   (_________________WD 9

Query      561 ETSKVITCGWDGQIKLWD 578 
WD40-rpts      _________________)

9 WD40-repeats found in QUERY=ENSDARP00000060431 (Len=578):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   169-217      4.50  300.70  0.00551       17.5%     24.90
  WD 2:  Seg 10   225-266      4.50  300.72  0.00550       12.5%     23.12
  WD 3:  Seg 13   277-316      8.02  446.05  6.1e-05       37.5%     52.60
  WD 4:  Seg 17   321-359      9.65  513.22  7.5e-06       37.5%     54.15
  WD 5:  Seg 21   363-403      6.27  373.58  0.00057       32.5%     49.36
  WD 6:  Seg 25   407-445      9.49  506.47  9.3e-06       30.0%     56.54
  WD 7:  Seg 29   446-488      7.11  408.18  0.00020       22.5%     52.26
  WD 8:  Seg 33   489-535      7.55  426.72  0.00011       35.0%     49.86
  WD 9:  Seg 37   539-578      7.38  419.33  0.00014       22.5%     52.33

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  169-217    TG-----PKKSEKRKKVKGGE--AADIDNF--LGPWAKYQ-DEKD---VAKPSEDEQKELDE
   WD 2  225-266    RG-----KNEE---------ESPAEEKTVL--HIKDAYDY-QGRS---YLHIPQDVGINLRS
   WD 3  277-316    -K-----KQLH---------V--WTGHTKG--VSAIRLFPKSGHL---LLSCSMDCKIKLWE
   WD 4  321-359    -R-----RCVR---------T--FIGHSKA--VRDVCFNN-SGTQ---FLSAAYDRYIKLWD
   WD 5  363-403    -G-----QCIS---------R--FTNRKV---PYCVKFNP-DEDKQNLLVAGMSDKKIVQWD
   WD 6  407-445    -G-----EVVQ---------E--YDRHLGA--VNTITFVD-ENRR---FVSTSDDKSLRVWE
   WD 7  446-488    WD--IPVDFKY---------I--AEPSMHS--MPAVTLSP-NGKW---LACQSMDNQILIFG
   WD 8  489-535    AQNRFRLNKKK---------I--FKGHMVAGYACQVDFSP-DMSY---VVSGDADGKLNIWD
   WD 9  539-578    -T-----KLYH---------R--IKAHDKV--CISALWHPHETSK---VITCGWDGQIKLWD

   WD40 Template    TG-----ECLR---------T--LSGHTSG--VTSVSFSP-DGKR---LVSGSEDGTIKVWD