Input parameters:

  Query = ENSDARP00000060454 (Len=572)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000060454, Len=572):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAEGGGKEANEIKTQFSTREGVYKLLPNSEYSRPNRVPFNSQGSNPVKVSFVNVNDQSGNGERICFNVGRELYFYIYKG 80  
WD40-rpts                  (_________________WD 1_________________)                            

Query       81 VKKAADLSKPIDKRIYKGTLPTCHDSNALTATAESVSLLVGFSAGQVQLIDPIKKETSKLFNEDRLIDKSAVTCLKWIPG 160 
WD40-rpts                  (_________________WD 2________________)                             

Query      161 SENLFLVSHSSGCLYLYNVEHTCGTTSPHYQLLKQGESYTVHTGKSKSARNPLLRWTVGEGAVNEFAFSPDGKFLACAGQ 240 
WD40-rpts                  (______________WD 3______________)   (_________________WD 4_________

Query      241 DGFLRVFCFDSAELHGTMKSYFGGLLCVCWSPDGRYIVTGGEDDLVTVWSFSDSRVIARGRGHKSWVSVVAFDHCITSVQ 320 
WD40-rpts      _______)   (_________________WD 5________________)   (____________________WD 6__

Query      321 DCDAEFSGSDEDFQMQFNGNRERANSAQSRISKRNSTDGRSVTYRFGSVGQDTQMCLWDLTEDILFPLTRTRTQTNVTNA 400 
WD40-rpts      _________________)  (_________________WD 7________________)(____________________

Query      401 ETTTLGANGNNSANSPLPRSNSLPQSSGNSPNTHKPQSIVDSALIATGVSKFATLALHEARKEKEHKRNHSISYISNKSS 480 
WD40-rpts      WD 8____________________)                                                       

Query      481 DKLNQLISSRGGKSDGCKTLGTMQCPRMEEIPLLEPLVCKKISHERLTVLIFLEDCLVTACQEGFVCTWARPGKLGLLSS 560 
WD40-rpts                           (______________________WD 9_____________________)          

Query      561 QNPTNSPSGTVV 572 
WD40-rpts                  

9 WD40-repeats found in QUERY=ENSDARP00000060454 (Len=572):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    13-52       5.63  347.07  0.00131       12.5%     17.52
  WD 2:  Seg  7    93-131      6.99  403.31  0.00023       10.0%     41.44
  WD 3:  Seg 13   173-206      5.43  338.81  0.00169       15.0%     37.07
  WD 4:  Seg 17   210-248      8.95  484.36  1.8e-05       30.0%     54.61
  WD 5:  Seg 21   252-290      9.81  519.92  6.1e-06       35.0%     55.21
  WD 6:  Seg 25   294-338      6.65  389.42  0.00035       25.0%     49.36
  WD 7:  Seg 29   341-379      7.70  432.66  9.2e-05       20.0%     33.54
  WD 8:  Seg 33   380-425      6.60  387.29  0.00038        5.0%     37.50
  WD 9:  Seg 41   502-550      6.00  362.41  0.00081       25.0%     47.92

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   13-52     IKT------Q-----------FSTREGVYKLLPNSEYSR------PNRVPFNSQGSNPVKVSF
   WD 2   93-131    -KR------I-----------YKGTLPTCHDSNALTATA------ESVSLLVGFSAGQVQLID
   WD 3  173-206    -----------------------CLYLYNVEHTCGTTSP------HYQLLKQGESYTVHTGKS
   WD 4  210-248    -RN------P-----------LLRWTVGEGAVNEFAFSP------DGKFLACAGQDGFLRVFC
   WD 5  252-290    -AE------L-----------HGTMKSYFGGLLCVCWSP------DGRYIVTGGEDDLVTVWS
   WD 6  294-338    -SR------V-----------IARGRGHKSWVSVVAFDHCITSVQDCDAEFSGSDEDFQMQFN
   WD 7  341-379    -RE------R-----------ANSAQSRISKRNSTDGRS------VTYRFGSVGQDTQMCLWD
   WD 8  380-425    LTEDILFPLT-----------RTRTQTNVTNAETTTLGA------NGNNSANSPLPRSNSLPQ
   WD 9  502-550    TMQ------CPRMEEIPLLEPLVCKKISHERLTVLIFLE------DC--LVTACQEGFVCTWA

   WD40 Template    TGE------C-----------LRTLSGHTSGVTSVSFSP------DGKRLVSGSEDGTIKVWD