Input parameters:

  Query = ENSDARP00000065205 (Len=778)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000065205, Len=778):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSNTTVTQKRRTLKVAKSSKTLNVSSGVFRPNQSTTKSINPLFSGKSFGSTGDSKVVDKISAQTPKHTAMVVDENGQDVT 80  
WD40-rpts                                                                                      

Query       81 PHPLYNPDPGVLQSKQGKVFTALDTSLTTMTEFPSIAFQTTNASLTGPFTRSFFGSASASRISQTAESVTDETKDLLVKQ 160 
WD40-rpts                                                                                      

Query      161 DLSNSISDIQSHREEPKEQLRENILDSTANCYLSETETIWLLDIPAVSVSVESEDAEAVKERNNAYTELCKNRQGNDKYV 240 
WD40-rpts                                                                                      

Query      241 ERSMQTFSDASKTKEVQCDSITMVDKAVMCTVWDMYDSFNNISDVSANTVVSSERHEATIPESSSEGHLVHPKRSNQSLS 320 
WD40-rpts                                                                                      

Query      321 VVSTVSTVSGSSTHIEKMACVLPLDEEPDLQLILQSDKLKQDLALMERVVLANVFQPKLAAYRQLPIIEDPDCVQMVMEE 400 
WD40-rpts                                                                                      

Query      401 ESWTEQSKNSHCPFLERLWDFSCELTMGRNVSCMVWNKKNPDLLAVGYGQVEFKNPNSGLVCCWSLKNPTWPDRVFHCES 480 
WD40-rpts                                                                          (___________

Query      481 GVTALDFSASNANQLAVGMYDGTIAIYNVQTSEQTPITDSSDCANLHTSPVWQLTWIDHEDGLAADKGEILVSVSSDGRI 560 
WD40-rpts      ______WD 1_________________)           (____________________WD 2________________

Query      561 SKWIHYKSMECVDLMKLKIHDLQWKRHISSLTPGMCFDFHPNDSKIYLVGTEEGHIHKCSSSYNEQYLESYKAHKRPVYK 640 
WD40-rpts      ___)             (___________________WD 3__________________)(___________________

Query      641 VTWSPFCSDVFLSCSSDWTIQLWRQDLQIPVMGFTSGQRVVFDIMWSPHCATVFGAVSEGKVEIWDLRVSSLDPTLVNWT 720 
WD40-rpts      WD 4___________________)   (_________________WD 5________________)      (_______

Query      721 SPGVNPTALLFSPETDCVLVGDSEGQVTVYKLKNITAGGGSQGETLEDVIQSTLSSQH 778 
WD40-rpts      __________WD 6________________)                           

6 WD40-repeats found in QUERY=ENSDARP00000065205 (Len=778):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   469-508      5.43  338.91  0.00168       30.0%     48.48
  WD 2:  Seg 14   520-564      5.22  330.14  0.00221       35.0%     46.65
  WD 3:  Seg 17   578-620      3.07  241.61  0.03399       22.5%     45.48
  WD 4:  Seg 20   621-664      6.30  374.81  0.00055       30.0%     45.52
  WD 5:  Seg 23   668-706      6.10  366.76  0.00071       15.0%     53.72
  WD 6:  Seg 27   713-751      4.48  299.86  0.00565       20.0%     51.05

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  469-508    -P---TWP--DRVFHCESGVTALDF--------SASNANQLAVGMYDGTIAIYN
   WD 2  520-564    SS---DC-----ANLHTSPVWQLTWIDHEDGLAAD-KGEILVSVSSDGRISKWI
   WD 3  578-620    KI---HDLQWKRHISSLTPGMCFDF--------HPNDSKIYLVGTEEGHIHKCS
   WD 4  621-664    SSYNEQYL--ESYKAHKRPVYKVTW--------SPFCSDVFLSCSSDWTIQLWR
   WD 5  668-706    -Q---IPV--MGFTSGQRVVFDIMW--------SP-HCATVFGAVSEGKVEIWD
   WD 6  713-751    -D---PTL--VNWTSPGVNPTALLF--------SP-ETDCVLVGDSEGQVTVYK

   WD40 Template    TG---ECL--RTLSGHTSGVTSVSF--------SP-DGKRLVSGSEDGTIKVWD