Input parameters:

  Query = ENSDARP00000065266 (Len=489)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000065266, Len=489):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 QVLRVWDPRTCAKLMKLKGHTDNVKSLLLNRDGTQCLSGSSDGTIRLWSLGQQRCIATYRVHDEGVWALQVNEAFTHVYS 80  
WD40-rpts                (_________________WD 1________________)(__________________WD 2________

Query       81 GGRDRKIYCTDLRNPDIRVLICEEKAPVLKMELDRSADPHNAIWVSTTKSTVNKWSLKGIHNFRASGDYDNDCSAPLTPL 160 
WD40-rpts      __________)   (__________________WD 3__________________)                        

Query      161 CTQPEQVIKGGASIIQCHILNDKRHILTKDTNNNVAYWDVLKACKVEDLGKMEFDEEIKKRFKMVYVPNWFSVDLKTGML 240 
WD40-rpts      (_________________WD 4________________)        (__________________WD 5__________

Query      241 TITLDESDCFAAWVSAKDAGFSSPDGSDPKLNLGGLLLQALLEFWPRTHINPMDEETELNHSSVNGEHESRIQKGNGYFQ 320 
WD40-rpts      _______)                                                                 (______

Query      321 VPPHTPVIFGEAGGRTLFRLLCRDSGGETESMLLNETVPQWVIDIFPQKNMPKFNKIPFYLQPHSSSGAKTLKKDRLSAS 400 
WD40-rpts      __________WD 6_______________)                                                  

Query      401 DMLQVRKVMEHVYEKIINLDSESQTGGSAAEKPSSEQKEDEEMAVQAEEKIELLCQDQVLDPNMDLRTVKHFIWKSGGDL 480 
WD40-rpts                                                                                      

Query      481 TLHYRQKST 489 
WD40-rpts               

6 WD40-repeats found in QUERY=ENSDARP00000065266 (Len=489):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    11-49       9.91  524.09  5.4e-06       42.5%     52.83
  WD 2:  Seg  6    50-91       8.22  454.22  4.7e-05       27.5%     53.48
  WD 3:  Seg 10    95-136      5.41  337.97  0.00173        7.5%     50.90
  WD 4:  Seg 15   161-199      6.15  368.63  0.00067        7.5%     51.01
  WD 5:  Seg 20   208-248      3.85  273.81  0.01264       12.5%     11.04
  WD 6:  Seg 26   314-350      2.89  233.84  0.04306       12.5%     21.69

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   11-49     -C--AKLMKLKGHTDNVKSLLLNRDG---TQ--CLSGSSDGTIRLWS
   WD 2   50-91     LGQQRCIATYRVHDEGVWALQVNEAF---TH--VYSGGRDRKIYCTD
   WD 3   95-136    -P--DIRVLICEEKAPVLKMELDRSADPHNA--IWVSTTKSTVNKWS
   WD 4  161-199    -C--TQPEQVIKGGASIIQCHILNDK---RH--ILTKDTNNNVAYWD
   WD 5  208-248    DL--GKME-FDEEIKKRFKMVYVPNW---FSVDLKTGMLTITLDESD
   WD 6  314-350    KG--NGYFQVPPHTPVIFG---EAGG---RT--LFRLLCRDSGGETE

   WD40 Template    TG--ECLRTLSGHTSGVTSVSFSPDG---KR--LVSGSEDGTIKVWD