Input parameters:

  Query = ENSDARP00000065316 (Len=580)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000065316, Len=580):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAPPTPHLAVRGSDGTLLLHGPPNCQESSAFQRDDRQGRYMTFSNDGTLFAWCNGSQVTVLKVPSGDLVKSFDLPKTTAL 80  
WD40-rpts                              (________________WD 1________________)(_________________

Query       81 EFSPLNKVLATWQQYTKTQDNPQGEANLQLWDLQTGACMKAFYQKKMTGWCPSWADDESISVRNVNNELHFFENNNFEVI 160 
WD40-rpts      _____WD 2______________________)   (________________WD 3________________)       

Query      161 ANKLHLQKVSEFALSPGSQPSKVAVYVPGSKGAPSFVRLYQYPNFGGPTCALANKSFFKADKVNMLWNKKATAVLVTAST 240 
WD40-rpts                                                                                      

Query      241 EVDKTGASYYGEQTLHYVATNGESAVVQLPKNGPIYDVSWSPNSTEFCVVYGFMPAKATVFNNKCESVFDFGTGPRNAAF 320 
WD40-rpts                          (_________________WD 4_________________) (__________________

Query      321 YSPQGHILVLAGFGNLRGQMEVWDVKKYKQVSKPQAEDTTHFSWCPDGEHIVTATCSPRLRVSNGYKIWHYTGTVLYKHE 400 
WD40-rpts      _WD 5__________________)(_________________WD 6_________________)                

Query      401 TPSGKELWEVLWQPFPAGVFPERAVKYQALPSELGSTEAKPAQAYRPPALRNKPQTASSKLHEEEPPQNMKPGAAGEKQP 480 
WD40-rpts                                                                                      

Query      481 SKAALKNQKRREAKKAAKQENKPDEAPPPAADPAPVSHVTSSCGDPETDKKIKNLKKKLKAIDELKEQQAAGKVMQKNQL 560 
WD40-rpts                                                                                      

Query      561 EKMQKEAQLLKELEDLELGL 580 
WD40-rpts                          

6 WD40-repeats found in QUERY=ENSDARP00000065316 (Len=580):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    25-62       3.33  252.26  0.02454       12.5%     44.74
  WD 2:  Seg  6    63-112      4.74  310.58  0.00405       22.5%     43.14
  WD 3:  Seg 10   116-153      3.54  260.83  0.01886       10.0%     44.97
  WD 4:  Seg 23   261-300      5.74  351.97  0.00112       17.5%     54.25
  WD 5:  Seg 27   302-344      6.59  386.73  0.00038       30.0%     43.85
  WD 6:  Seg 31   345-384      4.57  303.48  0.00505       17.5%     47.99

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   25-62     -CQESSAFQRDDRQGRYMTFSNDGTLFA---W----------CN-GSQVTVLK
   WD 2   63-112    VPSGDLVKSFDLPKTTALEFSPLNKVLA---TWQQYTKTQDNPQGEANLQLWD
   WD 3  116-153    -GACMKAFYQKKMTGWCPSWADDES-IS---V----------RNVNNELHFFE
   WD 4  261-300    NGESAVVQLPKNGPIYDVSWSPNSTEFC---V----------VYGFMPAKATV
   WD 5  302-344    NNKCESVFDFGTGPRNAAFYSPQGHILVLAGF----------GNLRGQMEVWD
   WD 6  345-384    VKKYKQVSKPQAEDTTHFSWCPDGEHIV---T----------ATCSPRLRVSN

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLV---S----------GSEDGTIKVWD