Input parameters:
Query = ENSDARP00000066181 (Len=292)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSDARP00000066181, Len=292):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MDNPNPDDNPDPELEDTLQLHEDEEIELEDTPQSPDALADELEDVCVADDDDDDGWQTEDELMESEQDDSELTFTRHTGS 80
WD40-rpts (_________________WD 1________________)(____________
Query 81 VFCVRLDPLTNSLAMSGGEDDRAFLWRVCDGEVLLECTGHKDSVVCVGFSSDSALAASGDMSGVIRVWSVEKREEVWSAE 160
WD40-rpts _____WD 2_________________) (_________________WD 3________________)(__________
Query 161 VGDLEWLEWHPCAPVLLAGVADGSVWMWKLPSGACRTFQSPGCQTTCGRILPDGKRAIVGYEDGSLRLWDLKQGTAIYVI 240
WD40-rpts _______WD 4_________________) (_________________WD 5________________)(_________
Query 241 KGQDGHRGALTCVSSNQEGALLLSGSVDGQAKLISSSSGKRGVCSRHGRRRP 292
WD40-rpts ___________WD 6___________________)
6 WD40-repeats found in QUERY=ENSDARP00000066181 (Len=292):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 3 29-67 5.87 356.96 0.00096 10.0% 13.93
WD 2: Seg 5 68-107 8.22 454.31 4.7e-05 30.0% 53.50
WD 3: Seg 9 111-149 10.32 540.99 3.2e-06 40.0% 54.70
WD 4: Seg 13 150-189 9.66 513.72 7.4e-06 17.5% 52.02
WD 5: Seg 17 192-230 9.68 514.51 7.2e-06 35.0% 54.22
WD 6: Seg 21 231-275 8.78 477.53 2.3e-05 32.5% 49.24
Multiple sequence alignment of 6 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 29-67 -ED-----TPQSPDALADELEDVCVADDDDDD-GWQTEDELMESEQ
WD 2 68-107 -DD-----SELTFTRHTGSVFCVRLDPLTNSLAMSGGEDDRAFLWR
WD 3 111-149 -GE-----VLLECTGHKDSVVCVGFSSDSALA-ASGDMSGVIRVWS
WD 4 150-189 VEK-----REEVWSAEVGDLEWLEWHPCAPVL-LAGVADGSVWMWK
WD 5 192-230 -SG-----ACRTFQSPGCQTTCGRILPDGKRA-IVGYEDGSLRLWD
WD 6 231-275 LKQGTAIYVIKGQDGHRGALTCVSSNQEGALL-LSGSVDGQAKLIS
WD40 Template TGE-----CLRTLSGHTSGVTSVSFSPDGKRL-VSGSEDGTIKVWD