Accession: ENSDARP00000071301 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = ENSDARP00000071301 (Len=455)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000071301, Len=455):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSRKVVRSSKFRHVFGQAVKADQCYDDIRISQMTWDSNFCSVNPKFVSMIVDASGGGAFIVLPLSKTGRIDMSQPTVCGH 80  
WD40-rpts                              (_________________WD 1_________________)      (_________

Query       81 TGPVLDIEFCPHNDNIIASGSEDCSVMIWEIPEGGLVTPLRDPVVKLEGHSKRVGLVSWHPTAHNVLMSAGCDNVVILWN 160 
WD40-rpts      ________WD 2_________________)          (_________________WD 3_________________)

Query      161 VARGEAVVRIDTVHTDLIYSVCWNRNGSQILTACKDKKLRVIDPRKGTVIYEKDKPHEGSRPVRAVFVSDGKILTTGFSR 240 
WD40-rpts      (___________________WD 4__________________)   (___________________WD 5__________

Query      241 MSERQVALWDPNNFGEPLTLQELDTSSGVLLPFFDPDTGIVYLCGKGDSSIRYFEVTDEAPYVHYLSMYSSKESQKGMGY 320 
WD40-rpts      _________)(____________________WD 6___________________)                         

Query      321 MPKRGLEVNKCEIARFYKLHERKCEPVVMTVPRKSDLFQEDLYPNTVGPEPSVEADDWFAGKDGEPILISLKDGFVATTK 400 
WD40-rpts                                                                                      

Query      401 NKEFKVIKSLMSTTSSSSCNRQSDSGDVQALQNEVKKLKEMVEDLTKRVNDLESK 455 
WD40-rpts

6 WD40-repeats found in QUERY=ENSDARP00000071301 (Len=455):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    25-64       3.67  266.13  0.01602       10.0%     20.68
  WD 2:  Seg  5    71-110      7.66  431.14  9.6e-05       32.5%     43.20
  WD 3:  Seg  9   121-160      6.70  391.58  0.00033       27.5%     50.16
  WD 4:  Seg 13   161-203      7.89  440.44  7.2e-05       22.5%     54.43
  WD 5:  Seg 17   207-250      4.53  301.64  0.00535       25.0%     48.51
  WD 6:  Seg 21   251-295      5.17  328.12  0.00235       27.5%     39.24

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   25-64     YDD---IRISQM----TWDSN--FCSVNPKF-V-SMI-VDAS---GGGAFIVLPL
   WD 2   71-110    -DM---SQPTVC----GHTGP--VLDIEFCPHN-DNI-IASG---SEDCSVMIWE
   WD 3  121-160    -RD---PVVKLE----GHSKR--VGLVSWHP-T-AHNVLMSA---GCDNVVILWN
   WD 4  161-203    VARGEAVVRIDT----VHTDL--IYSVCWNR-N-GSQ-ILTA---CKDKKLRVID
   WD 5  207-250    -GT---VIYEKD----KPHEGSRPVRAVFVS-D-GKI-LTTGFSRMSERQVALWD
   WD 6  251-295    PNN---FGEPLTLQELDTSSG--VLLPFFDP-DTGIV-YLCG---KGDSSIRYFE

   WD40 Template    TGE---CLRTLS----GHTSG--VTSVSFSP-D-GKR-LVSG---SEDGTIKVWD