Input parameters:

  Query = ENSDARP00000074880 (Len=660)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000074880, Len=660):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSVSYKVGTVKSKQSPNVNTQPKAPVVKGVKTTGKKKDEEEGIDTADGEEWMQGKTLVKPPDQLDLTEEELKEEITRVLT 80  
WD40-rpts                                                                                      

Query       81 ANNPNAPQNVVRYSFKEGCYKTIVFVDQMAIHFELEGNLVHKESDEGRRLMAKHTEREDCGGDERLENVPIKPGKREQKV 160 
WD40-rpts                                                                                      

Query      161 TNQFNFIDRASQTLNNLPREISCQTEPPPRANFSATANQWEIYDFYVEELQRREKSKEKQESQFPNKEEDRSKKKMIQAE 240 
WD40-rpts                                                                                      

Query      241 AQSDDISQLAKPAKIIERMVNQNIFDEVAQDFMYFEDAADEFRGEKGTLLPLWKFQYDKAKGLSVTALCWNHIYSDLFAV 320 
WD40-rpts                                                                                      

Query      321 GLGSYEFTQQERGMLLFYTLKNPSFPEFIFNTDSGVMCVDIHEQLSYLVAVGLYDGCVSVYDLRKKSDQPMYNSIASSGK 400 
WD40-rpts                            (_________________WD 1_________________)         (________

Query      401 HTGAVWQVKWQKDDLDSNHNFFSVSTDGRVVSWTLVKHEIVFTDIIKLPPVDKVPDDLKNVVATAGTSLDFHKQKDHHFL 480 
WD40-rpts      ___________WD 2__________________)                                              

Query      481 VGTEAGKIHKGSKYYSSKFLEMYDAHFMTVSCVRWNPFHPNVFISCGWDWMVKIWDHTINSPVFTFELKSSVTDVAWSPY 560 
WD40-rpts                      (_________________WD 3_________________)(__________________WD 4_

Query      561 SSTVFAAVTADGKVHVFDLSINKYEALCQQKVVSKKTRLLHIEFNPVHPIIIVGDDRGRVISLKLSPNLRKKPKEKKGQE 640 
WD40-rpts      _________________)(____________________WD 5____________________)                

Query      641 LPKGPEVEIAKMEQLLSSLR 660 
WD40-rpts                          

5 WD40-repeats found in QUERY=ENSDARP00000074880 (Len=660):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 10   343-382      3.82  272.53  0.01316       22.5%     47.60
  WD 2:  Seg 14   392-434      4.69  308.32  0.00435       25.0%     42.84
  WD 3:  Seg 21   497-536      5.51  342.39  0.00151       25.0%     46.13
  WD 4:  Seg 24   537-578      3.76  269.99  0.01423       25.0%     45.62
  WD 5:  Seg 28   579-624      4.06  282.31  0.00973       12.5%     58.26

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  343-382    -PS------FPEFIFN-TDSGVMCVDIHEQL----SYLVAVGLYDGCVSVYD
   WD 2  392-434    -YN------SIASSGK-HTGAVWQVKWQK-DDLDSNHNFFSVSTDGRVVSWT
   WD 3  497-536    -SK------FLEMYDA-HFMTVSCVRWNPFH----PNVFISCGWDWMVKIWD
   WD 4  537-578    HTI------NSPVFTFELKSSVTDVAWSPYS----STVFAAVTADGKVHVFD
   WD 5  579-624    LSINKYEALCQQKVVS-KKTRLLHIEFNP-V----HPIIIVGDDRGRVISLK

   WD40 Template    TGE------CLRTLSG-HTSGVTSVSFSP-D----GKRLVSGSEDGTIKVWD