Input parameters:

  Query = ENSDARP00000075253 (Len=390)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000075253, Len=390):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 SPSPSSNGVNLLSLPWEIVTQIASHLPAQCVINVLPKVCQTLGKVGEDRLAWQLRTQKLCGPAASFPVGPKQDFDWSRAC 80  
WD40-rpts                                                             (_______________WD 1_____

Query       81 LEMEELIGHWKGQGTPLEHMVLPSGHIADVNCVLLLGGAGAVCASGSRDRNVNLWDLNEGPRGALMHTLGGRGTISTHRG 160 
WD40-rpts      __________)(____________________WD 2___________________)             (__________

Query      161 WVWCLASSGPLLASGSFDSMVKLWDLQAGGAERGLIQCKAAVLCLSCERDTVLAGSHDQRLSIYDTRAANPLVKSLRLHS 240 
WD40-rpts      _____WD 3_______________)   (________________WD 4_______________)    (__________

Query      241 DAVLCLAADDQFILSGSKDQSVALFDRRAGKLLQKVQLSSYLLSVSFSGSEVWAGDNRGLLHTFSMSSSCLTPVQQFKTH 320 
WD40-rpts      ______WD 5_______________)   (_______________WD 6_______________)(______________

Query      321 TSLVTGVHYTPGALYTCSSDRSIKIHLPSAPPKTLCTLHHQAGVNGLSVKGGTLAIASGDMNVEVWRPRC 390 
WD40-rpts      ____WD 7__________________)   (________________WD 8_______________)   

8 WD40-repeats found in QUERY=ENSDARP00000075253 (Len=390):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    56-91       3.73  268.62  0.01484       12.5%     31.02
  WD 2:  Seg  5    92-136      7.75  434.80  8.6e-05       32.5%     48.46
  WD 3:  Seg 10   150-185      7.15  410.11  0.00018       35.0%     38.32
  WD 4:  Seg 13   189-225      7.02  404.44  0.00022       22.5%     46.96
  WD 5:  Seg 17   230-266      7.33  417.48  0.00015       22.5%     44.72
  WD 6:  Seg 21   270-305      5.68  349.29  0.00122       17.5%     48.22
  WD 7:  Seg 25   306-347      7.28  415.43  0.00016       30.0%     48.96
  WD 8:  Seg 29   351-387      6.98  403.13  0.00023       25.0%     47.96

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   56-91     TQ-----------KLCGPAASFPV-GPKQDFDWSRACLEMEELIGHWK
   WD 2   92-136    GQGTPLEHMVLPSGHIADVNCVLLLGGAGA---VCASGSRDRNVNLWD
   WD 3  150-185    GG----R--GTISTHRGWV--WCL-ASSGP---LLASGSFDSMVKLWD
   WD 4  189-225    -G----GAERGLIQCKAAV--LCL-SCERD---TVLAGSHDQRLSIYD
   WD 5  230-266    -N----PLVKSLRLHSDAV--LCL-AADDQ---FILSGSKDQSVALFD
   WD 6  270-305    -G----KLLQKVQLSSY---LLSV-SFSGS---EVWAGDNRGLLHTFS
   WD 7  306-347    MSSSCLTPVQQFKTHTSLVTGVHY-TPGA-----LYTCSSDRSIKIHL
   WD 8  351-387    -P----PKTLCTLHHQAGVNG--L-SVKGG---TLAIASGDMNVEVWR

   WD40 Template    TG----ECLRTLSGHTSGVTSVSF-SPDGK---RLVSGSEDGTIKVWD