Input parameters:

  Query = ENSDARP00000075344 (Len=1054)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000075344, Len=1054):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATVAAPSHVFGLRAGVKNNLLYLDEQTIIFPCGNNCVRYNIDQKFQRFIPGTERSQGMHALAISTNRRYLAVSECREKA 80  
WD40-rpts                                               (____________________WD 1______________

Query       81 TITVFDLEQEQNRRRKVLTGGEMVVDEFVCMAFSPDSKYLIGQAGGPDWTLFLWMWEKKKVMATVNISNNGPINQVSFNP 160 
WD40-rpts      _____)        (__________________WD 2_________________)(___________________WD 3_

Query      161 QDNSKICVSGKGVFKIFHYAGETLKQTNAFKTDSHNFLCHTWMTTEQVLAGTETGQLMMFESGRLRWEINVTSVQKTESE 240 
WD40-rpts      _________________) (___________________WD 4__________________)        (_________

Query      241 SKQQYSDEPFSALPQVTAIVSYSNGFACSMGQGTVCLFEKTEKADLYKKTRVIKIPPKRFSNDLSLTEKQKISTLCISPS 320 
WD40-rpts      _____________WD 5_____________________)                (__________________WD 6__

Query      321 EETLVASTDLGQLYSIHLSIAELQKGECAYFEYLSHSFHNNIITGLSTCIRKPLIATSSLDRSVRIWNFETNVLELYKEF 400 
WD40-rpts      ________________)               (_______________WD 7_______________)           (

Query      401 QEEAYSVALHPTGLYILVGFSDKLRLMTLLMDDIKIFKEFTIRNCRECTFSHGGHLFAAVNGNVINIYSTITFEEILNLK 480 
WD40-rpts      ____________WD 8___________)   (________________WD 9________________)   (_______

Query      481 GHNEKVQAVAFSLNDSCLVSCGMDGAVYEWNTLSGTRESESILKTCSYTGVAISPDAKTFFAVGTDCSLKEIHNSQILKE 560 
WD40-rpts      __________WD10________________)   (_________________WD11________________)(______

Query      561 MSSRDVVCTTVALSRSGRTIFIGTSTGTLRVIKYPLMIQNDWIEYQAHAGPITKMVITFDDQFLITVSEDGCLFIWKIID 640 
WD40-rpts      ___________WD12_________________)     (_________________WD13________________)   

Query      641 KEGQGLKREKELIYSEEILTNKLDFDEKSKMLLELNAKVEELQEDNKCQLSLKDTEYNKKINELSEKCMQQIISLNAEKE 720 
WD40-rpts                                                                                      

Query      721 VLKKEKDNQQEAHNKAISDILERHDKELHDMESSNNQKLMLEYEKYQELQLKLHNVQQEYEQQLHSMEESKTQALEDMMQ 800 
WD40-rpts                                                                                      

Query      801 SYEAKMEEKMILVNQYQDESQQRFKEFEEHIRQEEEDTDAEIHDIRMKYEQNLREEKKAHSKLKVELDTTKKRFHDLQRE 880 
WD40-rpts                                                                                      

Query      881 IENGNLEIEKLKQEVQRLQAVIKSLENDITGLKTAIQNRDGIIQDKEKNIFQLKKKNDTLNKTLEVMEFRAEYMQEQIEP 960 
WD40-rpts                                                                                      

Query      961 KENEIQQQKDQMVEVGCILTPWDWQTHKCVLVHNAQKDLENVLIALIRQTQIAKLQRVYFYLYLLLITIKQCVCKSQFVN 1040
WD40-rpts                                                                                      

Query     1041 QTERVPYLSVSSVN 1054
WD40-rpts                    

13 WD40-repeats found in QUERY=ENSDARP00000075344 (Len=1054):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    42-86       4.67  307.50  0.00446       20.0%     53.01
  WD 2:  Seg  9    95-135      4.76  311.24  0.00397       27.5%     36.77
  WD 3:  Seg 13   136-178      5.98  361.79  0.00083       17.5%     56.36
  WD 4:  Seg 17   180-222      5.05  323.08  0.00275       10.0%     44.70
  WD 5:  Seg 22   231-279      5.80  354.40  0.00104       15.0%     30.78
  WD 6:  Seg 26   296-337      5.99  362.06  0.00082       12.5%     46.83
  WD 7:  Seg 29   353-388      7.12  408.83  0.00019       17.5%     48.66
  WD 8:  Seg 32   400-428      3.34  252.70  0.02421       15.0%     45.49
  WD 9:  Seg 35   432-469      4.56  303.19  0.00510       10.0%     54.15
  WD10:  Seg 39   473-511      8.77  476.78  2.3e-05       35.0%     55.52
  WD11:  Seg 43   515-553      6.95  401.67  0.00024       25.0%     53.41
  WD12:  Seg 47   554-593      8.43  462.92  3.6e-05       25.0%     56.80
  WD13:  Seg 51   599-637      7.65  430.72  9.7e-05       22.5%     54.02

Multiple sequence alignment of 13 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   42-86     IDQ---KFQRFIPGTERSQGMHALAISTNR---------RYLA--VSECREKATITVFD
   WD 2   95-135    -RK---VLT---GGEMVVDEFVCMAFSPDS---------KYLIGQAGG--PDWTLFLWM
   WD 3  136-178    WEKKKVMAT---VNISNNGPINQVSFNPQD---------NSKI--CVS--GKGVFKIFH
   WD 4  180-222    AGE---TLKQTNAFKTDSHNFLCHTWMTTE---------QVLA--GTE--TGQLMMFES
   WD 5  231-279    VTS---VQK---TESESKQQYSDEPFSALPQVTAIVSYSNGFA--CSM--GQGTVCLFE
   WD 6  296-337    PPK-RFSND---LSLTEKQKISTLCISPSE---------ETLV--AST--DLGQLYSIH
   WD 7  353-388    -------YL---SHSFHNNIITGLSTCIRK---------PLIA--TSS--LDRSVRIWN
   WD 8  400-428    ----------------FQEEAYSVALHPTG---------LYIL--VGF--SD-KLRLMT
   WD 9  432-469    -DD---IKI---FKEFTIRNCRECTFSHGG---------HLFA--AVN---GNVINIYS
   WD10  473-511    -FE---EIL---NLKGHNEKVQAVAFSLND---------SCLV--SCG--MDGAVYEWN
   WD11  515-553    -GT---RES---ESILKTCSYTGVAISPDA---------KTFF--AVG--TDCSLKEIH
   WD12  554-593    NSQ---ILK---EMSSRDVVCTTVALSRSG---------RTIF--IGT--STGTLRVIK
   WD13  599-637    -QN---DWI---EYQAHAGPITKMVITFDD---------QFLI--TVS--EDGCLFIWK

   WD40 Template    TGE---CLR---TLSGHTSGVTSVSFSPDG---------KRLV--SGS--EDGTIKVWD