Input parameters:

  Query = ENSDARP00000077564 (Len=683)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000077564, Len=683):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRDTENMEAEMEYDDEEEPSFSDPEDFDDDISDQELLGDVLRDKPQEADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFS 80  
WD40-rpts                                                                                      

Query       81 KFGKITNEFYPDADGKTKGYVWFLEYSAPSHAHEAVKNADGYKLDKQHTFRVNLFTDFDKYMSICDEWEAPEKQPFKDFG 160 
WD40-rpts                                                                                      

Query      161 NLRHWMEDPDCRDQYSVIYDSGERTGIFANDVKEPIEVEERARWTETYVRWSPKGTYLATFHQRGIALWGGEKFKQIQRF 240 
WD40-rpts                                      (________________WD 1________________)(_________

Query      241 SHQGVQLIDFSPCESRYVVTFSPLMDTKDDPQAIIIWDVLTGQKKRGFHCESSAHWPIFKWSPDGKFFARMTQDMLSIYE 320 
WD40-rpts      ____________WD 2_____________________)   (_________________WD 3________________)

Query      321 TPSMGLLEKKSLKINGIKDFSWSPGDNIIAFWVPEDKDIPARVTLMQFPSRNEMRVRNLFNVVDCKLHWQKNGDYLCVKV 400 
WD40-rpts         (___________________WD 4___________________)   (_________________WD 5________

Query      401 DRTPKGTQGVVTNFEIFRMREKQVPVDVVEMKDSIIAFAWEPNGSKFAVLHGESPRINSSFYHVKSNGKIDLIKMFDKQQ 480 
WD40-rpts      ________)           (___________________WD 6__________________)    (____________

Query      481 ANSIFWSPQGQFLVLAGLRSSMNGALAFVDTSDCTMMNIAEHYMASDVEWDPTGRFVVTSVSWWSHKVDNAFWLWTFQGR 560 
WD40-rpts      _______WD 7__________________)(____________________WD 8____________________)    

Query      561 LLQKNNKERFCQLLWRPRPPSLLTQEQIKLIKKDLKKYSKIFEQKDRLSQSKASKELVDKRRTMMEEYRKHRKRAMDMYQ 640 
WD40-rpts                                                                                      

Query      641 EQRPLRLELRGGVDTDELDSNVDDWEEETIEFFINEEIIPIGD 683 
WD40-rpts                                                 

8 WD40-repeats found in QUERY=ENSDARP00000077564 (Len=683):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  8   193-230      4.71  309.34  0.00421       25.0%     52.15
  WD 2:  Seg 12   231-278      4.74  310.36  0.00408       25.0%     39.50
  WD 3:  Seg 16   282-320      3.65  265.24  0.01647       22.5%     52.60
  WD 4:  Seg 20   324-367      4.16  286.41  0.00857       15.0%     39.23
  WD 5:  Seg 24   371-409      3.91  276.31  0.01171        7.5%     47.19
  WD 6:  Seg 28   421-463      4.43  297.48  0.00608        5.0%     56.28
  WD 7:  Seg 32   468-510      4.24  289.78  0.00772       25.0%     43.99
  WD 8:  Seg 36   511-556      5.35  335.48  0.00187       20.0%     53.71

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  193-230    -KEPIEVEERARWTETYV-RWSPKGTYLA--------TFHQ------RG----IALWG
   WD 2  231-278    GEKFKQIQRFSHQGVQLI-DFSPCESRYVVTFSPLMDTKDD------PQ---AIIIWD
   WD 3  282-320    -GQKKRGFHCESSAHWPIFKWSPDGKFFA--------RMTQ------D----MLSIYE
   WD 4  324-367    -MGLLEKKSLKINGIKDF-SWSPGDNIIA---FWVPEDKDI------PA---RVTLMQ
   WD 5  371-409    -RNEMRVRNLFNVVDCKL-HWQKNGDYLC--------VKVD------RT---PKGTQG
   WD 6  421-463    EKQVPVDVVEMKDSIIAF-AWEPNGSKFA--------VLHG------ESPRINSSFYH
   WD 7  468-510    -GKIDLIKMFDKQQANSI-FWSPQGQFLV----LAGLRSSM------NG---ALAFVD
   WD 8  511-556    TSDCTMMNIAEHYMASDV-EWDPTGRFVV--------TSVSWWSHKVDN---AFWLWT

   WD40 Template    TGECLRTLSGHTSGVTSV-SFSPDGKRLV--------SGSE------DG---TIKVWD