Input parameters:

  Query = ENSDARP00000084220 (Len=1384)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000084220, Len=1384):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASSSSMDIEGATQHLRDILKLDRPGNSAEASLVESQRKPSFNGELNGVLGSDLMGAAMVEPTVHNSDKLNGQDTQTICL 80  
WD40-rpts                                                                                      

Query       81 SGDDGSICVPIRANIVEIVSSRDSSIDSKARGSNKVKIQPVAKYDWEHKYYYGNLIAVSNTYLAYAIRGANNHSMIRVLH 160 
WD40-rpts                                              (_________________WD 1_________________)

Query      161 LSSTERSLLKGFTGAVTDLAFAHLDSTLLGCVDEAGNMFIWQLTSHSSKIQDEVIVHIRRPEDTPLNSNRRLIWCPFIPE 240 
WD40-rpts      (__________________WD 2__________________)     (_________________WD 3___________

Query      241 DNDESPEDACQTLALLHEDRAEVWDLDILRSNNSSWPVDATELKEGFITIRGHAARISEGALSPDGTVLATASHDGYVKF 320 
WD40-rpts      _____)                     (_________________________WD 4_______________________

Query      321 WQIYIEGQDQPRCLHEWQPHNGQPLSCLLFCDNHKKQDPDVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDPFNC 400 
WD40-rpts      _)        (_______________________WD 5______________________)                   

Query      401 GVLPSLKASLDLSAEFLILSDVQRKVLYVMELLQDQEKGRASFTAVSEFLLTHPVLSFGVQDVSRARLRHTEVLPPEEES 480 
WD40-rpts                                                                                      

Query      481 ESMTAEGNQGTSESRSGIQIKLYCVHTKSLQDVQIWFQPNQGDSSSLFMPQSGSQDGFSFSDPLADLNVEAMSSDKESGD 560 
WD40-rpts                                                                                      

Query      561 SGSQNDLSKILPLPSPADFMSPAPSALPKLMTPDAFMTPSASMPASPGSSASSLTIVTAMSSSDSGARGGDDLTQSPKMS 640 
WD40-rpts                                                                                      

Query      641 VECVNSSFANAGSPRSNSILISGLGENIQVSPPNPPLSLDLQAIDPMVVPQASPTRARSPDVISSASTAMSQDIPEIASE 720 
WD40-rpts                                                                                      

Query      721 TLQRGLSGANADSGPILHSDSMASAASILHLLSPRARSSAEHSLLPLELGAASVDGEQRLSNTPSLLETALSQENAGAAG 800 
WD40-rpts                                                                                      

Query      801 GSCSDSSVNHAWPAAPDITRETRNSLRDNGLGDCSREEIKDRHISSPYHRRTYHLTQNDSQDASAEQSDHDDEVASLASS 880 
WD40-rpts                                                                                      

Query      881 SGNCGPRSSHRLPVKDWKTSPRSSPKLKRKSKKDEGESSQSRQIESQMSTEVQDELLQMLRSQQREIAELRQNQLDLLQR 960 
WD40-rpts                                                                                      

Query      961 VTSHMDAVQSSIMAHIEHAMLAQQEQEQRRMERILVEGQSRNQQLQDQLVQQLVQTLNNSLCNRLEKVLREEMKKTVPQT 1040
WD40-rpts                                                                                      

Query     1041 ISKSLEPVTGQMNSTIAAKLTAVEGALKENVTKVVKSKNTTDAIGRAAAEAMQGPIQAAYKETFQSIVLPVFERGCQSMF 1120
WD40-rpts                                                                                      

Query     1121 QQINDSFKQGTNEYIQQLETHIKNRKQRDQDTRDPVIGQLQQMIDSLQSSQDQLASTVTASVSSDVQHQLHMIVGNLQDS 1200
WD40-rpts                                                                                      

Query     1201 ILTQVQRIVKGEVSLAMKEQQAAVTSSIMQAMRSAAGTPVPSAHLDYQAQQASILQLLQQGQLNEAFQQALSAADLNLVL 1280
WD40-rpts                                                                                      

Query     1281 YVCETIDSQQVFGQQPCPLHQAVLLSLIQQLSTNLSTRTELKISYLEDAVMNLDHGDPVTRDHMSAVLTQVRQKLFLFLQ 1360
WD40-rpts                                                                                      

Query     1361 QDAHSPMSKRARRLMMMLQGLVNH 1384
WD40-rpts                              

5 WD40-repeats found in QUERY=ENSDARP00000084220 (Len=1384):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   121-160      4.06  282.39  0.00970       10.0%     15.62
  WD 2:  Seg  8   161-202      5.88  357.61  0.00094       30.0%     45.59
  WD 3:  Seg 11   208-246      2.86  232.98  0.04420        2.5%      5.05
  WD 4:  Seg 15   268-322      7.66  431.27  9.6e-05       35.0%     49.68
  WD 5:  Seg 19   331-381      3.32  251.96  0.02476       17.5%     40.85

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  121-160    VA---------------KYDWE-HKYYYG-NLIAVSNT-YLAYA-----------IRGANNHSMIRVLH
   WD 2  161-202    LS---------------STERSLLKGFTG-AVTDLAFAHLDSTL-----------LGCVDEAGNMFIWQ
   WD 3  208-246    -S---------------KIQDE-VIVHIR-RPEDTPLN-SNRRL-----------IWCPFIPEDNDESP
   WD 4  268-322    ILRSNNSSWPVDATELKEGFIT-IRGHAA-RISEGALS-PDGTV-----------LATASHDGYVKFWQ
   WD 5  331-381    -P---------------RCLHE-WQPHNGQPLSCLLFC-DNHKKQDPDVPFWRFLITGADQNQELKMWC

   WD40 Template    TG---------------ECLRT-LSGHTS-GVTSVSFS-PDGKR-----------LVSGSEDGTIKVWD