Accession: ENSDARP00000084300 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = ENSDARP00000084300 (Len=447)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000084300, Len=447):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLSPVLCSDLAALEPEYTDADVISTVEFNQTGEFLATGDKGGRVVIFQREPLGEYNVYSTFQSHEPEFDYLKSLEIEEKI 80  
WD40-rpts              (_________________WD 1_________________)           (____________________

Query       81 NKIRWLPPHNPAHFLLTTNDKTVKLWKVSERDKRAEGYNLRDEEGRLKDLSTITTLQVPVLRPMDLLVEASPRRVFANAH 160 
WD40-rpts      _WD 2_____________________)(____________________WD 3___________________)(_______

Query      161 AYHINSISVNSDCETYLSADDLRINLWHLSITDRSFNIVDLKPENMEDLSEVITVAEFHPHHCHLLAFSSSTGTTRLCDM 240 
WD40-rpts      ________WD 4_______________)            (_________________WD 5________________) 

Query      241 RARALCDQHAKLFEEAVDPTRRSFFSEIVSSVSDVKFSHSGRYLLTRDYLTVKVWDLNMENKPVEIYQVHDYLRTKLCSL 320 
WD40-rpts                        (________________WD 6________________)              (_________

Query      321 YESDCIFDKFECAWNGTDSVIMTGAYNNYFRMFDRASRRDVTLEASREVCKRRAVLQPRRVCVGKKRKETDVSVDSLDFR 400 
WD40-rpts      __________WD 7___________________)   (_________________WD 8________________)    

Query      401 KKILHTAWHPKENIIAIAASNNLYIFQDRLTPNGHHNTPEIQSAPPK 447 
WD40-rpts

8 WD40-repeats found in QUERY=ENSDARP00000084300 (Len=447):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     9-48       7.43  421.53  0.00013       17.5%     39.27
  WD 2:  Seg  5    60-107      4.95  318.95  0.00313       15.0%     44.75
  WD 3:  Seg  8   108-152      5.31  334.11  0.00195       12.5%     17.04
  WD 4:  Seg 11   153-188      5.94  360.01  0.00088       20.0%     43.50
  WD 5:  Seg 15   201-239      6.07  365.42  0.00074       20.0%     37.57
  WD 6:  Seg 19   259-296      7.14  409.43  0.00019       32.5%     44.96
  WD 7:  Seg 23   311-354      5.49  341.30  0.00156       10.0%     46.65
  WD 8:  Seg 27   358-396      6.17  369.35  0.00065        5.0%     29.48

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    9-48     DLAA------LE-----PEYTDAD----VISTVEFNQ--TGEFLATGDKGGRVVIFQ
   WD 2   60-107    TFQSHEPEFDYL-----KSLEIEE----KINKIRWLPPHNPAHFLLTTNDKTVKLWK
   WD 3  108-152    VSER------DKRAEGYNLRDEEG----RLKDLSTIT--TLQVPVLRPMDLLVEASP
   WD 4  153-188    ---R------RV-----FANAHAY----HINSISVNS--DCETYLS-ADDLRINLWH
   WD 5  201-239    --LK------PE-----NMEDLSE----VITVAEFHP-HHCHLLAFSSSTGTTRLCD
   WD 6  259-296    -PTR------RS-----FFSEIVS----SVSDVKFSH--SGRYLLT-RDYLTVKVWD
   WD 7  311-354    DYLR------TK-----LCSLYESDCIFDKFECAWNG--TDSVIMTGAYNNYFRMFD
   WD 8  358-396    -RRD------VT-----LEASREV----CKRRAVLQP--RRVCVGKKRKETDVSVDS

   WD40 Template    TGEC------LR-----TLSGHTS----GVTSVSFSP--DGKRLVSGSEDGTIKVWD