Input parameters:

  Query = ENSDARP00000086251 (Len=1548)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000086251, Len=1548):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLAAVEHGPVLCSDSNILCLSWKGRVPKSEKEKPVCRRRYYEEGWLATGNARGVVGVTFTSSHCRRDRNTPQRINFNLRG 80  
WD40-rpts                                                                 (____________________

Query       81 HNSEVVLVRWNEPFQKLATCDMEGGIFVWIQYEGRWSVELVNDRGAQVSDFTWSHDGTQALIAYRDGFVLVGSVSGQRHW 160 
WD40-rpts      ___WD 1______________________)   (_________________WD 2_________________)   (___

Query      161 SSEINLESQITCGIWTPDDQQVLFGTADGQVIVMDCHGRMLAHVLLHESDGIVSMSWNCPNFLVEDSTESDTDSDDQTPA 240 
WD40-rpts      ______________WD 3________________)   (_________________WD 4________________)   

Query      241 HGTLIKFCFEVQNLKPLLTVSFISGDISLMNNYDDLSPNIIRSGLKDVEVQWCSQGDLLAVAGMERHGLPTDSLMRNALV 320 
WD40-rpts      (__________________WD 5__________________)                                      

Query      321 KFYNVQGEHIYTLETPAQRPITTICWGHRDSRLFLACGPALYVVRVEHRVASLQLLCQQGIASALKEERDVGKLNMPSLL 400 
WD40-rpts            (_________________WD 6________________)                                   

Query      401 CSYVTTAFIPTIKPPIPDPNNIRDFVSYPTAGNERLHCTMKRSEENPEAGGPCYTLYLEHLGGLVPILKGRRISKLRPEF 480 
WD40-rpts                                                                                      

Query      481 VIMDPKMDGKADEVCVNGMISYMTDSCNCSDSSDIELSDEWVGRKSPKLSRGNRSPKLPRINMESRKSPKLAQTSQEMSR 560 
WD40-rpts                                                                                      

Query      561 SPRLPKKPPLRSPSLTRREFPVDGFSEHNYLAQVTSNIWGTKFKIVGLASFLPANLGAVIYKTSLLHLQPRQMTIYLPEV 640 
WD40-rpts                                                                                      

Query      641 RKISLDFMSLPVFNPNVFSEDEDDLPVMGPSGVSADNPSCTVNIPIAPIHSPAQAMSPTQSIGLVQSLLANQNIQLDVLT 720 
WD40-rpts                                                                                      

Query      721 NRQDTVTAQYTVPTRYSNPGQVIFSGLEMNNILSGTLPPPPHHLPQPPHQQRQQLMPQIPHPDQPPDRGEQVLPLKVPSR 800 
WD40-rpts                                                                                      

Query      801 PQSFIEMDTLEIQLRKVNPPPPYPGTVVSAAAAIPTTAPPGLLVSNENGTTLSTDTCLTKDEFSLHPISLQYPTPLGYER 880 
WD40-rpts                                                                                      

Query      881 ITTFDSSGNVEEVCRPRRRLLRNQNAYGMQGMGSSATLKVTSSENKKVQLPYSSATLSRLSVPRYSIPSGDPPPYPDTSN 960 
WD40-rpts                                                                                      

Query      961 QMNTIRSPTQRIDSSLIHATLRRDRREPSLKVSQMVDAVRTLPTKSKMNGSLTLSYQPRIPSALYTCTQCSSNSSSTSKG 1040
WD40-rpts                                                                                      

Query     1041 AQHSTIIVHSKSASPLASQSSYNLLSPTDNSRDRTVYVNSAFTEDETVSQQCHLEKSMRHLTLGDVNLTVKRPPPYQWDS 1120
WD40-rpts                                                                                      

Query     1121 PAAEQLWIPQEQNLLPGPPPHKPPPFILSQPQHLEIARLPFVLSAKHTPSPNSMTLPSPYQLSLSPYPSVVGHGGPPLQP 1200
WD40-rpts                                                                                      

Query     1201 LQSPAQTCGPNDMVASSPFSQPDSTLVLPPGYPSNVSNLGCCTLPPMYPGTSSCNNLQLHPMSLHPWSTYSTCPPMPDHS 1280
WD40-rpts                                                                                      

Query     1281 ATLPSKTHQTLEKPVLSPPVEHLNLQSTSEVVAESGESFQDQSSLNESPQGAERFSKKGRKRLDSRAEEANMSGVSEGKS 1360
WD40-rpts                                                                                      

Query     1361 KKESRTLSDFNSLISSPRLGSREKKKPKGQKEPLNKTKKLSRTSNEFQDSSESEPELFISGDELMNQSQSSKKGWKSKRN 1440
WD40-rpts                                                                                      

Query     1441 LRTANELEEIKCRKANEREDRSLGSQGFVYVMANKQPLWNEATQVYQLDFGGRVTQESAKNFQIELDGRQVMQFGRIDGN 1520
WD40-rpts                                                                                      

Query     1521 AYILDFQYPFSAVQAFAVALANVTQRLK 1548
WD40-rpts                                  

6 WD40-repeats found in QUERY=ENSDARP00000086251 (Len=1548):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    60-110      7.15  410.08  0.00018       32.5%     44.37
  WD 2:  Seg  8   114-153      5.59  345.52  0.00137       22.5%     59.10
  WD 3:  Seg 12   157-195      6.77  394.33  0.00030       22.5%     50.97
  WD 4:  Seg 16   199-237      5.75  352.25  0.00111       15.0%     29.96
  WD 5:  Seg 19   241-282      3.63  264.58  0.01680       15.0%     38.94
  WD 6:  Seg 26   327-365      3.37  253.85  0.02337       20.0%     57.41

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   60-110    TSSHCRRDRNTPQRINFNL-RGHNSE---VVLVRWNEPFQKLATCDMEGGIFVWI
   WD 2  114-153    -GRWSV-----------EL-VNDRGA--QVSDFTWSHDGTQALIAYRDGFVLVGS
   WD 3  157-195    -QRHWS-----------SE-INLESQ---ITCGIWTPDDQQVLFGTADGQVIVMD
   WD 4  199-237    -RMLAH-----------VL-LHESDG---IVSMSWNCPNFLVEDSTESDTDSDDQ
   WD 5  241-282    -HGTLI-----------KF-CFEVQNLKPLLTVSFISGDISLMNNYDDLSPNIIR
   WD 6  327-365    -GEHIY-----------TLETPAQRP---ITTICWGHRDSRLFLAC-GPALYVVR

   WD40 Template    TGECLR-----------TL-SGHTSG---VTSVSFSPDGKRLVSGSEDGTIKVWD