Input parameters:

  Query = ENSDARP00000086448 (Len=482)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000086448, Len=482):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MARKTVSRKRKAEEPKEQQFDWCQSAFKRPRVSSSVRHAQHWWQSRRSVVCSVRGREFRPQQQHEWSFQRSLRGFAAGRI 80  
WD40-rpts      (______________WD 1_____________)                                               

Query       81 PGILREREFSLGRLNKVFASQWLNHRQVVCGTKCNTLFVVDVLSGQITRIPMLKDREGRGEVSQGLGGVGSPFHFHNPGS 160 
WD40-rpts                                      (___________________WD 2__________________)   (_

Query      161 VGGLDVQQGCGIHAIELNPSRTLLATGGDNPNSLAVYRLPTLDPVCVGDDGHNDWIFSIAWISDTMAVSGSRDGSMGLWE 240 
WD40-rpts      ________________WD 3_________________)    (________________WD 4________________)

Query      241 ISEDVLSQAEKRQNVEGVPGYSHISHRALKDIPKEYTHPYNCKVRALAFNNSHKELGAVSLDGYFHLWKAEDNLSKELST 320 
WD40-rpts                                  (__________________WD 5_________________)     (_____

Query      321 KLPYCKENVCLAYGLDWSVYAVGSQAHVSFLDPRQSSQNIKSVSSRERGSGIRSVSFYEHIVTVGTGQGSLLFYDIRAQR 400 
WD40-rpts      ____________WD 6________________)   (_________________WD 7________________)   (_

Query      401 FLDGPSSTPGGYRNRTAEGILKLTTGRGWLNHDETWRSYFSDIRSFPNAVYTHCYDDSGTKLFVAGGPLCSGLHGNYAGL 480 
WD40-rpts      _________________WD 8__________________)                                        

Query      481 WS 482 
WD40-rpts        

8 WD40-repeats found in QUERY=ENSDARP00000086448 (Len=482):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-33       4.17  286.98  0.00842        5.0%      2.83
  WD 2:  Seg  6   113-155      5.32  334.45  0.00193       12.5%      7.60
  WD 3:  Seg  9   159-198      6.91  400.26  0.00025       15.0%     45.44
  WD 4:  Seg 12   203-240      7.15  410.09  0.00018       27.5%     47.88
  WD 5:  Seg 17   269-309      7.76  435.29  8.5e-05       20.0%     45.62
  WD 6:  Seg 20   315-353      5.65  348.21  0.00126       12.5%     43.60
  WD 7:  Seg 24   357-395      6.81  395.79  0.00029       17.5%     49.28
  WD 8:  Seg 27   399-440      2.87  233.42  0.04362       10.0%     -1.10

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-33     -----------MARKTVSRKRKAEEPKEQQFDWCQSA-FKRP---RVS
   WD 2  113-155    KCNT-LFVVDVLSGQITRIPMLKDREGRGEVSQGLGG-VGSP---FHF
   WD 3  159-198    -GSV-GG---LDVQQGCGIHAIELNPSRTLLATGGDNPNSLA---VYR
   WD 4  203-240    -DPV-CV---GDDGHNDWIFSIAWISD-TMAVSGSRD-GSMG---LWE
   WD 5  269-309    LKDIPKE---YTHPYNCKVRALAFNNSHKELGAVSLD-GYFH---LWK
   WD 6  315-353    -SKE-LS---TKLPYCKENVCLAYGLDWSVYAVGSQA-HVSF---LDP
   WD 7  357-395    -SQN-IK---SVSSRERGSGIRSVSFYEHIVTVGTGQ-GSLL---FYD
   WD 8  399-440    -QRF-LD---GPSSTPGGYRNRTAEGILKLTTGRGWL-NHDETWRSYF

   WD40 Template    TGEC-LR---TLSGHTSGVTSVSFSPDGKRLVSGSED-GTIK---VWD