Input parameters:

  Query = ENSDARP00000090283 (Len=1519)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000090283, Len=1519):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MADGAVNFGASMNQSCLTSRAKKANNNSTSVPANTRRKTRQSHRRDIHNRVVLEKVLGITASSSSALTCDPNTGLVAYPA 80  
WD40-rpts                                                       (_________________WD 1_________

Query       81 GCVIVILSPKKNKQTHIFNTSRKTFSALAFSQNGKYLVTGESGHMPCVRVWDVAERTQVAEVQCHKYGVSCVAFSPNGSY 160 
WD40-rpts      _______)   (__________________WD 2_________________)   (__________________WD 3__

Query      161 IVSVGYQHDRTVSVWEWKKGTVIASNKVSSRVLGVSFSEDNSYFVTAGNRHVKFWYLDASKERRVNSTVPLIGRSGLLGE 240 
WD40-rpts      _______________)(_________________WD 4_________________)                (_______

Query      241 HQNSQFCGLACGRGSMASSTYCITHTGLLCQFNSNRQLDSWVDLKTTSAQCLSVSGTFVFCGCADGTVRVFSPQDLRYIT 320 
WD40-rpts      __________WD 5________________) (_________________WD 6_________________)        

Query      321 TLHRPHCLGVDVSQGTQPGHLFSANPEAQYPDTLALTFDPVTKHLTCVYNDHSVYVWDVRDIRNVGKVYSALYHSGCVWS 400 
WD40-rpts               (______________________WD 7_____________________)(_____________________

Query      401 VETYPELEDPSAACLSPGSFLTCSSDNTIRLWRSESPQSHSAALGLRHNLYSQDIVRIVYVDDDTQYLKAEAEKAEGGAG 480 
WD40-rpts      ____WD 8________________________)      (_____________WD 9_____________)(________

Query      481 QDGKSGIRVLGISPDGQHLAAGDRSGNLRIFGLQFMDELQKIEAHDSEVLCLAFSPAETGLHLLASASRDRLIHIFDMDS 560 
WD40-rpts      __________WD10_________________)   (__________________WD11__________________)(__

Query      561 KCNLVQTVYDHSASITAVKFTGLNSELCMVSCGADKSVYFRSAEKTSDGLVFSRSHHIVEKTTLYDMDLDATRTHTAIAC 640 
WD40-rpts      __________________WD12___________________)(_____________________WD13____________

Query      641 QDRNIRVYNVKSGKMKKCFKGSMNDDGTLLKVQLDPSGMFLATSCSDKNICVFDYESGECVATLFGHSEIVTGMKFSQDC 720 
WD40-rpts      ________)   (__________________WD14__________________)   (_________________WD15_

Query      721 RHLITVSGDSCVFVWRLDSQMTNSMRKRLAERKQQAGLRLQRAPTKQEVIRRETYITVPCNALTHMEEDGLMAEVNPEDG 800 
WD40-rpts      _______________)                                                                

Query      801 LEDCRTPDRLDSTDASLDSVVLQTNGKMPMWVRRLGGEGEKDGTGAANRVQYQPQGRWAVQSDPLAIRTVLEMKSNQLPL 880 
WD40-rpts                                       (_________________WD16________________)        

Query      881 SHTPSRVMGEEELEEDPRFHPQSLDSLLDEDLEDGEEEEEEKICGVSSDGFSSSLHGPEFLQFPHGEENFNPELSSSEKT 960 
WD40-rpts                                                                                      

Query      961 GYILYPANSTALSTGEGEFDVKALCEGTAGDPDEEELSPDSACSAESPESHSDQPHDQDTDSLSQVSSTGSSGVEEDEEE 1040
WD40-rpts                                                                                      

Query     1041 SGTLLRQHFDTLGVATNEKFNTDLSSLQPTTESNFLNPRLSISTRFLSRFQSRFRSAACRPAACLSSIPDESTDSQTLDQ 1120
WD40-rpts                                                                                      

Query     1121 TMEKPKHLSNSGSVEEKEKTVIKRRSSMSSRRSSNPSLLRWKNALGEITNKNQSTTQSTTSAPGVLSNKSTSNSCDASVT 1200
WD40-rpts                                                                                      

Query     1201 RSRQSYMGPTASSRAKINQSNSVESLNLCISEETPLNALPNVEHSKENMIPPSSPVVSSAPLHQSPVLGNHSARASLRLD 1280
WD40-rpts                                                                                      

Query     1281 LIGHNRASLSPVSLKSRRGKVEHHDSPRRQALVTPTEMRSLGKESRKQISNIEQSLAPSDRLSTGAGMFSRSPMVRQTSD 1360
WD40-rpts                                                                                      

Query     1361 TVFEDLQSVRSDQTSVSSPMTNAVSQDNQDSADNNSIPEETGLSAEALSVQMCKEMVNELWHTIHKATDLYSKLCSIPEL 1440
WD40-rpts                                                                                      

Query     1441 SEQQEQMKGVLQEVFVGVQSELNSICPQKTQPSTKSTRPISEDSPGRQLRDDRAVALLEKYSEMLLLRMTEKGAQATLE 1519
WD40-rpts                                                                                     

16 WD40-repeats found in QUERY=ENSDARP00000090283 (Len=1519):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    50-88       4.76  311.32  0.00396       10.0%     49.19
  WD 2:  Seg  9    92-132      6.54  384.92  0.00040       25.0%     56.58
  WD 3:  Seg 13   136-176      7.71  433.23  9.0e-05       35.0%     57.49
  WD 4:  Seg 17   177-216      5.17  328.40  0.00233       25.0%     55.17
  WD 5:  Seg 22   233-271      3.07  241.53  0.03408        7.5%     47.62
  WD 6:  Seg 25   273-312      6.40  379.12  0.00048       17.5%     54.15
  WD 7:  Seg 30   330-378      5.75  352.25  0.00111       22.5%     40.43
  WD 8:  Seg 33   379-433      5.43  339.07  0.00168       25.0%     53.29
  WD 9:  Seg 37   440-471      2.91  234.97  0.04161       17.5%     37.91
  WD10:  Seg 40   472-512      7.30  416.16  0.00015       22.5%     47.83
  WD11:  Seg 43   516-557      6.94  401.48  0.00024       32.5%     56.62
  WD12:  Seg 47   558-602      6.24  372.48  0.00059       22.5%     53.26
  WD13:  Seg 51   603-649      4.81  313.54  0.00370       10.0%     44.78
  WD14:  Seg 55   653-694      6.47  381.92  0.00044       25.0%     56.86
  WD15:  Seg 59   698-736      9.39  502.52  1.0e-05       42.5%     58.85
  WD16:  Seg 69   834-872      4.63  305.92  0.00468       15.0%     35.45

Multiple sequence alignment of 16 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   50-88     RV---V-L-----E-KV---------LG-------ITAS---SSSALTCDPNT---G----------LV--AYPA---G--CVIVILS
   WD 2   92-132    -N---K-Q-----T-HI---------FN-------TSRK---TFSALAFSQNG---K----------YL--VTGE--SGHMPCVRVWD
   WD 3  136-176    -R---T-Q-----V-AE---------VQ-------CHKY---GVSCVAFSPNG---S----------YI--VSVGYQHD--RTVSVWE
   WD 4  177-216    WK---KGT-----V-IA---------SN-------KVSS---RVLGVSFSEDN---S----------YF--VTAG---N--RHVKFWY
   WD 5  233-271    -G---R-S-----G-LL---------GE-------HQNS---QFCGLACGRGS---M----------AS--STYC--IT--HTGLLCQ
   WD 6  273-312    NS---N-R-----Q-LD---------SW-------VDLK---TTSAQCLSVSG---T----------FV--FCGC--AD--GTVRVFS
   WD 7  330-378    VD---V-S-----Q-GTQPGHLFSANPE-------AQYP---DTLALTFDPVT---K----------HL--TCVY--ND--HSVYVWD
   WD 8  379-433    VR---D-IRNVGKV-YS---------AL-------YHSG---CVWSVETYPEL---EDPSAACLSPGSF--LTCS--SD--NTIRLWR
   WD 9  440-471    HS---A-A-----L----------------------------GLRHNLYSQDI---V----------RI--VYVD--DD--TQYLKAE
   WD10  472-512    AE---K-A-----EGGA---------GQ-------DGKS---GIRVLGISPDG---Q----------HL--AAGD--RS--GNLRIFG
   WD11  516-557    -M---D-E-----L-QK---------IE-------AHDS---EVLCLAFSPAETGLH----------LL--ASAS--RD--RLIHIFD
   WD12  558-602    MDSKCN-L-----V-QT---------VY-------DHSA---SITAVKFTGLN---S----------ELCMVSCG--AD--KSVYFRS
   WD13  603-649    AE---K-T-----S-DG---------LVFSRSHHIVEKT---TLYDMDLDATR---T----------HT--AIAC--QD--RNIRVYN
   WD14  653-694    -G---K-M-----K-KC---------FK-------GSMNDDGTLLKVQLDPSG---M----------FL--ATSC--SD--KNICVFD
   WD15  698-736    -G---E-C-----V-AT---------LF-------GHSE---IVTGMKFSQDC---R----------HL--ITVS--GD--SCVFVWR
   WD16  834-872    -R---L-G-----G-EG---------EK-------DGTG---AANRVQYQPQG---R----------WA--VQSD--PL--AIRTVLE

   WD40 Template    TG---E-C-----L-RT---------LS-------GHTS---GVTSVSFSPDG---K----------RL--VSGS--ED--GTIKVWD