Accession: ENSDARP00000094274 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = ENSDARP00000094274 (Len=521)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000094274, Len=521):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGEVRKLQKKLRQIENLEIKISLTPEEKIKVSKKAELRSRLAELLLQLSGPQQTQGIVGKEEDKMKRQVEEVTEQHVGHR 80  
WD40-rpts                 (_______________WD 1_______________)                                 

Query       81 PALKIAREERRENEASDGNQTDGRGETNLPVSLTEEEQEDAEFRSRKQTWEKAKFRLRALEGHSDIITCAVAVDNLVISG 160 
WD40-rpts                    (________________WD 2_______________)  (________________WD 3______

Query      161 SRDTTVKVWHVPTATEQRNLGGHSGGVTCLCAPPPESCKRLARAFDLADKERFVLSGSTDCCVKIWALSSGQCVKSIYTF 240 
WD40-rpts      _________)   (________________________WD 4________________________)   (_________

Query      241 NAVTSLCFIPEGEGFIVTGSDAGKLQVWSWSSLENWLSVNAHLDAVTTLQSHGPLVFSGSAEGSVCVWEVCDEGPEPLRR 320 
WD40-rpts      ________WD 5________________)   (________________WD 6_______________)           

Query      321 LHLWGPEVTGCGKEDGLNGRLVLSPRGDRVFLSCGKASIRILNWRTGVMTRLANHSSTAGVTDCVNQIPGLLIASCFDLA 400 
WD40-rpts             (_______________WD 7_______________)  (____________________WD 8__________

Query      401 NGESTINLFSLPQCKYLVSLTSSDLPRILCFAAWLTASGDHRWVTGGHDLIVWEQLPGTFKKRGDVTVRRDRRLEDCILE 480 
WD40-rpts      _________)   (__________________WD 9_________________)                          

Query      481 SDRDSEDDRSEDDADDEDATTQDAPETEEPASSSWLRCVLQ 521 
WD40-rpts

9 WD40-repeats found in QUERY=ENSDARP00000094274 (Len=521):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    12-47       6.22  371.67  0.00061       12.5%     39.85
  WD 2:  Seg  5    95-131      5.24  331.28  0.00213       10.0%     28.34
  WD 3:  Seg  7   134-170      6.72  392.40  0.00032       35.0%     51.95
  WD 4:  Seg 11   174-227      7.75  434.63  8.6e-05       35.0%     54.64
  WD 5:  Seg 15   231-269      7.69  432.11  9.3e-05       35.0%     54.05
  WD 6:  Seg 19   273-309      7.60  428.57  0.00010       27.5%     48.38
  WD 7:  Seg 24   328-363      7.20  412.05  0.00017       12.5%     46.86
  WD 8:  Seg 27   366-410      5.85  356.20  0.00099       25.0%     45.39
  WD 9:  Seg 31   414-454      3.69  266.89  0.01565       17.5%     39.74

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   12-47     -------RQIEN--LE-----IKISLTP---------------EEK-IKVS----KKAELRSRLAELLLQ
   WD 2   95-131    ASDGNQTDGRGE--TN-----LPVSLTE---------------EEQ-EDAE----F--RSRKQTWE----
   WD 3  134-170    KFRLRALEGHSD--II-----TCAVA-----------------VDN-LVIS----GSRDTTVKVWH----
   WD 4  174-227    ATEQRNLGGHSG--GV-----TCLCAPPPESCKRLARAFDLADKER-FVLS----GSTDCCVKIWA----
   WD 5  231-269    GQCVKSIYTFNA---V-----TSLCFIP---------------EGEGFIVT----GSDAGKLQVWS----
   WD 6  273-309    LENWLSVNAHLD--AV-----TT--LQS---------------HGP-LVFS----GSAEGSVCVWE----
   WD 7  328-363    ---VTGCGKEDG--LN-----GRLVLSP---------------RGD-RVFL----SCGKASIRILN----
   WD 8  366-410    TGVMTRLANHSSTAGV-----TDCVNQI---------------PGL-LIASCFDLANGESTINLFS----
   WD 9  414-454    CKYLVSLTSSDL--PRILCFAAWLTASG---------------DHR-WVTG----GH---DLIVWE----

   WD40 Template    GECLRTLSGHTS--GV-----TSVSFSP---------------DGK-RLVS----GSEDGTIKVWD----