Input parameters:

  Query = ENSDARP00000094999 (Len=1358)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000094999, Len=1358):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATNPAALPLREFCPLYYLLNAIPAKVQKGFRSVLVYLTALDSNSDYIAIGSSIGMLYLYCRRVSQMNKYNLEGKCEAIT 80  
WD40-rpts                            (_________________WD 1________________)(__________________

Query       81 AVKLLSCFDDLVAVGTASGRVAFFQLVSPLPGRNKQLRRFDVVGLHKSTITALAWSANGMKLFSGDDKGKVVYSAVDLDQ 160 
WD40-rpts      _WD 2___________________)           (_________________WD 3________________)  (__

Query      161 GVCNPVVLFEEPSAIVQLEYSQKVLLVSSYQRSMLFYTQEQSHQQLGSKPRKSNGKFGACFQPALCKQSDLVVYAARPGL 240 
WD40-rpts      ________________WD 4__________________)      (_________________WD 5_____________

Query      241 RLWRTDVRGRVGETHVLKPLFNQDVPHFELFPRSGPTGGYRPSERQLGMISCFLKEGWVLSWNEYSVYVVDCTNQVIIGG 320 
WD40-rpts      ___)                                                                            

Query      321 LESSGDIVSVSCTENEIFILKGDRDILRISNCPEGLVSNLSDHSYRFTSPLSPPTILLPPNGAVETAQPIRTMPIITEQD 400 
WD40-rpts                                                                                      

Query      401 TQASPSSEEVHDGVEESEEVQEEQHLEEFSHAVEALEVAEDLEQQRASLGTVESRSRSSSITSWDSAQGMFTTTEASASE 480 
WD40-rpts                                                                                      

Query      481 LSSSRYSTITQEDFQQELVVKAIKLKKKGKRRRQESGNRMNERSSWSESIFSQDGAGSDVLNTPMSEPPSDHTSLLCSSL 560 
WD40-rpts                                                                                      

Query      561 DLDGEYHSSDAFPIQSPSEPLLNQEPCLVAVNQAAQTSPPCPASLTLDMECQLYSENVFAENEQIAATPDVDMLLECTFS 640 
WD40-rpts                                                                                      

Query      641 YMQASDEQDIMKKYVKEHKDVLEDSEEHFKQSLHEDFNLDLSYDPIRPLGYSPEPEPSPSSDEEDIYAHGVPSSASLGDG 720 
WD40-rpts                                                                                      

Query      721 LNALSLQSSSAEQKEDEETQLLKADQLAESWMGYSGPGCGILSLVVTDRYIWCLDFKGGLFCSGLSNGGLNWQKFEENVH 800 
WD40-rpts                                                                                      

Query      801 QVALSPSGSLLWKVEQKTMTAYACGKVTIKGKRHWYKALDDTAFVALGDDTAWIIRTNGDLYIQTGLSADRPCARSVKVD 880 
WD40-rpts                                                                                      

Query      881 CPCPMAQMAARGGVVWALSEQRGVFYREGLNSYCAEGEHWKYDTVSESQGLEPICIALGENNTVWALDTSGNLWFRTGVT 960 
WD40-rpts                                                                                      

Query      961 AKKPQGEDDHWWQVSITDYVVFDQGSLFQTLIQATQTVATVTRAPVERVAERLRVAFLSQHSQCQPSLISVNISGVWIAS 1040
WD40-rpts                                                                                      

Query     1041 GRNEFHVAKGSLIGTYWRSTVPRGTASATKWAFVFSSAVPAKEGSFLWLGQSRKDLFCIWDQDLQMRPFTIQFPPDVEMM 1120
WD40-rpts                                                                                      

Query     1121 QLSACRDALWGLDHYGRVHIRTLSASCSTGMHWSLLDLSQLGHVRFLSLSCGSQNVWACDTNGMVYFRVGTQPLNPSMML 1200
WD40-rpts                                                                                      

Query     1201 PAWICIESPEQPAGHYLVKIQTSPNDRMLWALDNRGNVLVRIGITEEMPVGTAWEHIPGLQACQLVLSMRTAWVRLANGQ 1280
WD40-rpts                                                                                      

Query     1281 VARRYGITEKNPAGDYWKKIPGLASCLAVTPMDELWAVSPTGALNQRLTKTLQNYRSKNHVNAGSLSGEELEEEWEVI 1358
WD40-rpts                                                                                    

5 WD40-repeats found in QUERY=ENSDARP00000094999 (Len=1358):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    23-61       4.36  294.62  0.00665       10.0%     39.39
  WD 2:  Seg  4    62-105      4.44  298.24  0.00594       17.5%     51.80
  WD 3:  Seg  8   117-155      6.67  390.06  0.00034       22.5%     52.85
  WD 4:  Seg 12   158-199      3.08  241.69  0.03391        7.5%     15.94
  WD 5:  Seg 17   206-244      3.18  246.18  0.02956       15.0%     25.20

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   23-61     -IPA---KVQKGFRSVLVYLTA--LDSNSDYIAIGSSIGMLYLYC
   WD 2   62-105    RRVSQMNKYNLEGKCEAITAVK-LLSCFDDLVAVGTASGRVAFFQ
   WD 3  117-155    -LRR---FDVVGLHKSTITALA--WSANGMKLFSGDDKGKVVYSA
   WD 4  158-199    LDQG---VCNPVVLFEEPSAIVQLEYSQKVLLVSSYQRSMLFYTQ
   WD 5  206-244    LGSK---PRKSNGKFGACFQPA--LCKQSDLVVYAARPG-LRLWR

   WD40 Template    TGEC---LRTLSGHTSGVTSVS--FSPDGKRLVSGSEDGTIKVWD