Input parameters:

  Query = ENSDARP00000096387 (Len=524)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000096387, Len=524):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATHHRQNAAGRRKVQVSYVIRDEVEKYNRNGVNALQLDPALNRLFTAGRDSIIRIWSVNQHKDPYIASMEHHTDWVNDI 80  
WD40-rpts                           (________________WD 1_______________)     (________________

Query       81 VLCCNGKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTT 160 
WD40-rpts      _WD 2________________)   (_________________WD 3________________)            (___

Query      161 SSLSGNKDSIYSLAMNQMGTVIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKSLLLNRDGTQCLSGSSDGTIRLWSLGQ 240 
WD40-rpts      ______________WD 4________________)   (_________________WD 5________________)   

Query      241 QRCIATYRVHDEGVWALQVNEAFTHVYSGGRDRKIYCTDLRNPDIRVLICEEKAPVLKMELDRSADPHNAIWVSTTKSTV 320 
WD40-rpts      (_________________WD 6________________)   (__________________WD 7_______________

Query      321 NKWSLKGIHNFRASGDYDNDCSAPLTPLCTQPEQVIKGGASIIQCHILNDKRHILTKDTNNNVAYWDVLKACKVEDLGKM 400 
WD40-rpts      ___)         (________________________WD 8________________________)         (___

Query      401 EFDEEIKKRFKMVYVPNWFSVDLKTGMLTITLDESDCFAAWVSAKDAGFSSPDGSDPKLNLGGLLLQALLEFWPRTHINP 480 
WD40-rpts      _____________WD 9________________)                                              

Query      481 MDEEKRWTNAETLSVSVSPLLFSLISHSSDVFVANDVFRSAELL 524 
WD40-rpts                                                  

9 WD40-repeats found in QUERY=ENSDARP00000096387 (Len=524):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    22-58       8.30  457.61  4.2e-05       22.5%     47.45
  WD 2:  Seg  5    64-102      9.39  502.52  1.0e-05       32.5%     52.56
  WD 3:  Seg  9   106-144      9.50  506.98  9.1e-06       30.0%     54.13
  WD 4:  Seg 14   157-195      9.25  496.81  1.3e-05       30.0%     46.66
  WD 5:  Seg 17   199-237     10.20  535.92  3.7e-06       42.5%     55.89
  WD 6:  Seg 21   241-279      8.86  480.77  2.1e-05       25.0%     55.09
  WD 7:  Seg 25   283-324      6.52  383.87  0.00042        7.5%     54.74
  WD 8:  Seg 30   334-387      6.46  381.52  0.00045       10.0%     47.62
  WD 9:  Seg 35   397-434      4.33  293.38  0.00691       10.0%     32.48

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   22-58     RDE-----------------VEKYNRNGVNALQLDPAL---NRLFTAGRDSIIRIWS
   WD 2   64-102    -DP--------------YIASMEHHTDWVNDIVLCCNG---KTLISASSDTTVKVWN
   WD 3  106-144    -GF--------------CMSTLRTHKDYVKALAYAKDK---ELVASAGLDRQIFLWD
   WD 4  157-195    -TV--------------TTSSLSGNKDSIYSLAMNQMG---TVIVSGSTEKVLRVWD
   WD 5  199-237    -CA--------------KLMKLKGHTDNVKSLLLNRDG---TQCLSGSSDGTIRLWS
   WD 6  241-279    -QR--------------CIATYRVHDEGVWALQVNEAF---THVYSGGRDRKIYCTD
   WD 7  283-324    -PD--------------IRVLICEEKAPVLKMELDRSADPHNAIWVSTTKSTVNKWS
   WD 8  334-387    SGDYDNDCSAPLTPLCTQPEQVIKGGASIIQCHILNDK---RHILTKDTNNNVAYWD
   WD 9  397-434    LGK----------------MEFDEEIKKRFKMVYVPNW---FSVDLKTGMLTITLDE

   WD40 Template    TGE--------------CLRTLSGHTSGVTSVSFSPDG---KRLVSGSEDGTIKVWD