Input parameters:
Query = ENSDARP00000096476 (Len=344)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSDARP00000096476, Len=344):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MNLLPSNPHGNGLLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGHVEMLFRCNYLALVGGGKKPKYPPN 80
WD40-rpts (________________WD 1_______________) (____________________WD 2_______________
Query 81 KVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPA 160
WD40-rpts _____)(________________WD 3________________) (__________________WD 4_________
Query 161 THSGHVQIVDLANTEKPPVDIPAHEGVLCCITLNLQGTRIATASEKGTLIRIFDTSAGQLIQELRRGSQTANIYCINFNQ 240
WD40-rpts _________) (_________________WD 5_________________) (__________________WD 6
Query 241 DASLICVSSDHGTVHIFAAEDPKRNKQSSLASASFLPKYFSSKWSFSKFQVPSGSPCVCAFGTEPNAVIAICADGSYYKF 320
WD40-rpts _________________)
Query 321 LFNPKGECSRDVYAQFLEMTDEKI 344
WD40-rpts
6 WD40-repeats found in QUERY=ENSDARP00000096476 (Len=344):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-37 5.36 336.12 0.00184 22.5% 41.94
WD 2: Seg 4 41-86 4.66 306.96 0.00454 15.0% 37.87
WD 3: Seg 8 87-124 3.52 260.08 0.01930 20.0% 40.39
WD 4: Seg 12 129-170 3.36 253.35 0.02373 12.5% 47.74
WD 5: Seg 16 175-214 7.26 414.35 0.00016 22.5% 51.37
WD 6: Seg 20 218-258 7.03 405.17 0.00022 20.0% 54.96
Multiple sequence alignment of 6 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-37 MN--LLPSN-PH--GN--GLLYAGFNQDHGCFA-------CGMENG--FRVYN
WD 2 41-86 -LKEKEKQE-FL--EG--GVGHVEMLFRCNYLALVGGGKKPKYPPNK-VMIWD
WD 3 87-124 DLKKKTVIEIEF--ST--EVKAVKLRRDRIVVV-------L---DSM-IKVFT
WD 4 129-170 -PHQLHVFE-TC--YNPKGLCVLCPNSNNSLLA------FPATHSGH-VQIVD
WD 5 175-214 -EKPPVDIP-AH--EG--VLCCITLNLQGTRIA-------TASEKGTLIRIFD
WD 6 218-258 -GQLIQELR-RGSQTA--NIYCINFNQDASLIC-------VSSDHGT-VHIFA
WD40 Template TGECLRTLS-GH--TS--GVTSVSFSPDGKRLV-------SGSEDGT-IKVWD