Input parameters:
Query = ENSDARP00000104754 (Len=821)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSDARP00000104754, Len=821):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAAPVMDTCHVSCCANRAPNVVSWGRGGLIAFGTCNSVAIYNPEEIRVVDLLNKHTGRVNAVQWVHEPDCSPENQLISGG 80
WD40-rpts (________________WD 1________________) (___________________WD 2___________
Query 81 SDNNVIVWEKLDGKFRACAVCSGHSGPVCAVDAVSLSSSHLLVASASSDSTVKLWTYSSDAAECLQTVAFGSGFMMDVSL 160
WD40-rpts ________) (__________________WD 3__________________) (__________________
Query 161 ALLPGSRVPVLACGGDDSRVHLYVQLSGQFQRVLTLTGHEDWVRGVEWANKDGELWLASCSQDCLIRVWRLFAKTAAEPD 240
WD40-rpts _WD 4__________________) (__________________WD 5_________________)
Query 241 LQTDGIIKMKENIFQVSGEEFAVTLETVLAGHENWVYGIHWQPPSVKGDSVEQSLKLLSASMDKTMILWGPEEDSGMWVE 320
WD40-rpts (________________________WD 6________________________)(_________
Query 321 MVRVGEVGGNTLGFYGCQMSPDGSMILAHAFHGALHLWHHDSNQEWRPSVVISGHFNAVQDMSWDPEGEFIITVGSDQTT 400
WD40-rpts _____________WD 7_____________________) (_________________WD 8_____________
Query 401 RLFTPWTRKGSSQITWHEISRPQIHGYDMQCLTMVGRFQFVSGADEKVLRVFKAPRNFVENFAHISGTSLEKLLGCNDIA 480
WD40-rpts ___) (____________________WD 9____________________) (________________
Query 481 DLPEGASTPALGLSNKAVFQGDLASPSPQQDGGDFNSLSDQYKESYFQPLKLAEPPTEDDLLQNTLWPEVQKLYGHGFEM 560
WD40-rpts _WD10________________) (_________________WD11________________)_____________
Query 561 FCLASDCARTVVASACKASKAEHASILLWSTASWKQLQSLSCHSLTITQMAFSPNGQLLLAVSRDRTWSLWRRGNPDLDT 640
WD40-rpts ______WD12___________________) (_________________WD13________________)
Query 641 EAMFSLYANTSKDTSVHTRIIWSCDWSADNKYFVTSSRDKKVIIWGHAGSGVAVGEGEDARVTSCSSVLDVGDSATAVSI 720
WD40-rpts (_________________WD14________________) (___________
Query 721 CPFLCSDHSYLLAVGLENGQILLYKWKPLEDLSSESDWSRCKDTDACQGHTMVVKRLRWRPRLGRGGHGGQDSKEEQAWV 800
WD40-rpts _____WD15_______________) (_________________________WD16__________
Query 801 QLASAGADHVVKIFDINLSAL 821
WD40-rpts ______________)
16 WD40-repeats found in QUERY=ENSDARP00000104754 (Len=821):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 5-42 3.61 263.88 0.01717 10.0% 51.16
WD 2: Seg 5 46-89 6.54 384.68 0.00041 27.5% 53.86
WD 3: Seg 9 95-136 7.09 407.48 0.00020 32.5% 55.45
WD 4: Seg 13 142-184 4.98 320.44 0.00299 25.0% 56.15
WD 5: Seg 17 190-230 7.11 408.38 0.00020 32.5% 50.38
WD 6: Seg 23 257-310 6.74 393.20 0.00031 32.5% 52.71
WD 7: Seg 27 311-359 7.38 419.43 0.00014 25.0% 57.67
WD 8: Seg 31 366-404 8.04 446.96 5.9e-05 22.5% 51.51
WD 9: Seg 35 408-453 4.50 300.41 0.00556 15.0% 35.90
WD10: Seg 39 464-502 4.32 293.01 0.00699 15.0% 33.41
WD11: Seg 43 509-547 3.30 251.03 0.02548 7.5% 5.32
WD12: Seg 44 547-590 4.93 318.47 0.00318 17.5% 47.25
WD13: Seg 48 594-632 9.35 500.97 1.1e-05 35.0% 56.91
WD14: Seg 52 648-686 8.50 465.63 3.3e-05 27.5% 43.41
WD15: Seg 57 709-745 4.01 280.42 0.01031 17.5% 22.42
WD16: Seg 59 761-815 4.23 289.53 0.00778 27.5% 39.32
Multiple sequence alignment of 16 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 5-42 VMD---------TCHVSCCANRAPNVV------S--WGR---------G-----G--------------------L-IA-----FGTCNSVAIYN
WD 2 46-89 -IR---------VVDLLNKHTGRVNAV------Q--WVH---------EPDCSPEN--Q----------------L-IS-----GGSDNNVIVWE
WD 3 95-136 -FR---------ACAVCSGHSGPVCAV---DAVS--LSS---------S-----HL--L----------------V-AS-----ASSDSTVKLWT
WD 4 142-184 -AE---------CLQTVAFGSGFMMDV------SLALLP---------G-----SRVPV----------------L-AC-----GGDDSRVHLYV
WD 5 190-230 -FQ---------RVLTLTGHEDWVRGV------E--WAN---------K-----DG--E--------------LWL-AS-----CSQDCLIRVWR
WD 6 257-310 SGE----EFAVTLETVLAGHENWVYGI------H--WQPPSVKGDSVEQ-----SL--K----------------L-LS-----ASMDKTMILWG
WD 7 311-359 PEEDSGMWVEMVRVGEVGGNTLGFYGC------Q--MSP---------D-----GS--M----------------I-LA-----HAFHGALHLWH
WD 8 366-404 -WR---------PSVVISGHFNAVQDM------S--WDP---------E-----GE--F----------------I-IT-----VGSDQTTRLFT
WD 9 408-453 -RK---------GSSQITWHEISRPQIHGYDMQC--LTM---------V-----GR-FQ----------------F-VS-----GADEKVLRVFK
WD10 464-502 HIS-----------GTSLEKLLGCNDI------A--DLP---------E-----GA--S----------------TPAL-----GLSNKAVFQGD
WD11 509-547 -QQ---------DGGDFNSLSDQYKES------Y--FQP---------L-----KL--A----------------E-PP-----TEDDLLQNTLW
WD12 547-590 -WP---------EVQKLYGHGFEMFCL------A--SDC---------A-----RT--V----------------V-ASACKASKAEHASILLWS
WD13 594-632 -WK---------QLQSLSCHSLTITQM------A--FSP---------N-----GQ--L----------------L-LA-----VSRDRTWSLWR
WD14 648-686 -AN---------TSKDTSVHTRIIWSC------D--WSA---------D-----NK--Y----------------F-VT-----SSRDKKVIIWG
WD15 709-745 ------------LDVGDSATAVSICPF------L--CSD---------H-----SY--L----------------L-AV-----GLENGQILLYK
WD16 761-815 -CK---------DTDACQGHTMVVKRL------R--WRP---------R-----LG--RGGHGGQDSKEEQAWVQL-AS-----AGADHVVKIFD
WD40 Template TGE---------CLRTLSGHTSGVTSV------S--FSP---------D-----GK--R----------------L-VS-----GSEDGTIKVWD