Input parameters:

  Query = ENSDARP00000105402 (Len=487)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000105402, Len=487):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVSLICTLQSHRDDVNCVAFSGDLLATCSADKSICVYSSRDFSELPFSPLSGHGYGVHCCCFSACGQYLASCSTDATTMV 80  
WD40-rpts      (________________WD 1________________)(___________________WD 2__________________

Query       81 WSMDTGEIEAVLEHPGRSPVRVCAFSPDSSHLVSGGSDGSIALWDFTSRTLRRTGVVNDTSIVACSFTPCGQMFITGSTY 160 
WD40-rpts      _)   (_________________WD 3_________________)   (_________________WD 4__________

Query      161 GDLRLWDLNMNHLHAEKNAHDLGVSCAQFAPKMMKGTDGCVQFRLASCGQDSLLKIWIVSLLPSAGIKMQLAHTLTGQSA 240 
WD40-rpts      ______)   (_____________________WD 5_____________________)          (___________

Query      241 PVLSCAYSPDGQMLVSGSVDKTVTVYQADEGVLLYTLHQHDRYVTACAFSPTAPLIATGSMDKSVNIWRMEEGSSAQGKS 320 
WD40-rpts      ______WD 6________________)   (_________________WD 7________________)     (_____

Query      321 LPDEKAAFSNTEGRKACGHSRLMVSEWSEEEVLAWLREEGLEAVTDAFKSNNIDGEELLSLSKETLSSDLHIESLGLRSK 400 
WD40-rpts      _________WD 8______________)   (_________________WD 9_________________)         

Query      401 VMKKIEELKMVPVYNGTPDEFLCPITREIMKDPVIAADGYSYEREAIEAWISTKNRTSPMTNLPLQTTLLTPNRTLKMAI 480 
WD40-rpts                                                                                      

Query      481 FRWSTSQ 487 
WD40-rpts             

9 WD40-repeats found in QUERY=ENSDARP00000105402 (Len=487):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-38       8.25  455.26  4.5e-05       32.5%     41.72
  WD 2:  Seg  4    39-82       9.02  487.10  1.7e-05       40.0%     48.58
  WD 3:  Seg  7    86-125      8.63  471.23  2.8e-05       45.0%     57.83
  WD 4:  Seg 11   129-167      9.42  503.70  1.0e-05       27.5%     55.40
  WD 5:  Seg 15   171-218      7.52  425.14  0.00012       27.5%     54.61
  WD 6:  Seg 19   229-267      9.69  515.08  7.1e-06       42.5%     55.66
  WD 7:  Seg 23   271-309      9.80  519.46  6.2e-06       35.0%     55.44
  WD 8:  Seg 27   315-348      7.07  406.60  0.00021       15.0%     46.69
  WD 9:  Seg 30   352-391      6.17  369.50  0.00065       17.5%     51.11

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-38     MVS----LICTLQSH-RDDVNCV-AFSGD-----------LLATCSADKSICVYS
   WD 2   39-82     SRDFSELPFSPLSGH-GYGVHCC-CFSACGQ---------YLASCSTDATTMVWS
   WD 3   86-125    -GE----IEAVLEHPGRSPVRVC-AFSPDSS---------HLVSGGSDGSIALWD
   WD 4  129-167    -RT----LRRTGVVN-DTSIVAC-SFTPCGQ---------MFITGSTYGDLRLWD
   WD 5  171-218    -NH----LHAEKNAH-DLGVSCA-QFAPKMMKGTDGCVQFRLASCGQDSLLKIWI
   WD 6  229-267    -MQ----LAHTLTGQ-SAPVLSC-AYSPDGQ---------MLVSGSVDKTVTVYQ
   WD 7  271-309    -GV----LLYTLHQH-DRYVTAC-AFSPTAP---------LIATGSMDKSVNIWR
   WD 8  315-348    ----------SAQGK-SLPDEKA-AFSNTEG---------RKACGHSRLMVSEWS
   WD 9  352-391    -VL----AWLREEGL-EAVTDAFKSNNIDGE---------ELLSLSKETLSSDLH

   WD40 Template    TGE----CLRTLSGH-TSGVTSV-SFSPDGK---------RLVSGSEDGTIKVWD