Input parameters:

  Query = ENSDARP00000106094 (Len=487)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000106094, Len=487):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVSLICTLQSHRDDVNCVAFSGDLLATCSADKSICVYSSRDFSELPFSPLSGHGYGVHCCCFSACGQYLASCSTDATTMV 80  
WD40-rpts      (________________WD 1________________)(___________________WD 2__________________

Query       81 WSMDTGEIEAVLEHPGRSPVRVCAFSPDSSHLVSGGSDGSIALWDFTSRTLRRTGVVNDTSIVACSFTPCGQMFITGSTY 160 
WD40-rpts      _)   (_________________WD 3_________________)   (_________________WD 4__________

Query      161 GDLRLWDLNMNHLHAEKNAHDLGVSCAQFAPKMMKGTDGCVQFRLASCGQDSLLKIWIVSLLPSAGIKMQLAHTLTGQSA 240 
WD40-rpts      ______)   (_____________________WD 5_____________________)          (___________

Query      241 PVLSCAYSPDGQMLVSGSVDKTVTVYQADEGVLLYTLHQHDRYVTACAFSPTAPLIATGSMDKSVNIWRMEEGSSAQGEL 320 
WD40-rpts      ______WD 6________________)   (_________________WD 7________________)(__________

Query      321 FADEKAAFSNTEGRKACGHSRLMVSEWSEEEVLAWLREEGLEAVTDAFKSNNIDGEELLSLSKETLSSDLHIESLGLRSK 400 
WD40-rpts      _______WD 8________________)   (_________________WD 9_________________)         

Query      401 VMKKIEELKMVPVYNGTPDEFLCPITREIMKDPVIAADGYSYEREAIEAWISTKNRTSPMTNLPLQTTLLTPNRTLKMAI 480 
WD40-rpts                                                                                      

Query      481 FRWSTSQ 487 
WD40-rpts             

9 WD40-repeats found in QUERY=ENSDARP00000106094 (Len=487):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-38       8.29  456.94  4.3e-05       32.5%     42.00
  WD 2:  Seg  4    39-82       9.05  488.44  1.6e-05       40.0%     48.58
  WD 3:  Seg  7    86-125      8.70  473.89  2.6e-05       45.0%     57.85
  WD 4:  Seg 11   129-167      9.41  503.23  1.0e-05       27.5%     55.53
  WD 5:  Seg 15   171-218      7.55  426.55  0.00011       27.5%     55.00
  WD 6:  Seg 19   229-267      9.74  516.85  6.7e-06       42.5%     55.55
  WD 7:  Seg 23   271-309      9.83  520.91  5.9e-06       35.0%     55.80
  WD 8:  Seg 27   310-348      7.68  431.80  9.4e-05       17.5%     42.73
  WD 9:  Seg 31   352-391      6.22  371.61  0.00061       17.5%     51.45

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-38     MVS----LICTLQSHR-DDVNCV-AFSGD-----------LLATCSADKSICVYS
   WD 2   39-82     SRDFSELPFSPLSGHG-YGVHCC-CFSACGQ---------YLASCSTDATTMVWS
   WD 3   86-125    -GE----IEAVLEHPGRSPVRVC-AFSPDSS---------HLVSGGSDGSIALWD
   WD 4  129-167    -RT----LRRTGVVND-TSIVAC-SFTPCGQ---------MFITGSTYGDLRLWD
   WD 5  171-218    -NH----LHAEKNAHD-LGVSCA-QFAPKMMKGTDGCVQFRLASCGQDSLLKIWI
   WD 6  229-267    -MQ----LAHTLTGQS-APVLSC-AYSPDGQ---------MLVSGSVDKTVTVYQ
   WD 7  271-309    -GV----LLYTLHQHD-RYVTAC-AFSPTAP---------LIATGSMDKSVNIWR
   WD 8  310-348    -ME----EGSSAQGEL-FADEKA-AFSNTEG---------RKACGHSRLMVSEWS
   WD 9  352-391    -VL----AWLREEGLE-AVTDAFKSNNIDGE---------ELLSLSKETLSSDLH

   WD40 Template    TGE----CLRTLSGHT-SGVTSV-SFSPDGK---------RLVSGSEDGTIKVWD