WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSDARP00000107159 [Danio rerio] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSDARP00000107159 (Len=743) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSDARP00000107159, Len=743): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAAVQDGPMEVDAEKETKPEILSDGTANPSGNTGGGTLSSSPLTAAPAAGAPKPEDQQTLLAVLQFLKRSKLAESVEILR 80
WD40-rpts
Query 81 REAGLAEELEDSHTDAGAGGKDGDAGDTKTLLSRVSIAGAAAPQSTLTPIPAKSGDDQPDVSVVLSAYSQQGDPSLYKVY 160
WD40-rpts
Query 161 YSDLKKFIESVLDCHRAELSQLFYPLFVHMYLELVYNNHESEAKAFFDKFSGDQECYYEDDLRVLCGLTKKEHMKGNEAL 240
WD40-rpts
Query 241 LDFRTSRFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKSQIDSMSGSLAGEARREVNKVKVFYGLL 320
WD40-rpts (__________________________________WD 1_________________________________)
Query 321 KEPEIEVPLDDEDEEAENEEGKPKKKKTKKDSMGSKSKKQDPNAPQQNRIPLPELKDSDKLDKIMYMKESTKRIRLGPET 400
WD40-rpts
Query 401 LPSICFYTFLNAYQGLTAVDFTDDSSLIAGGFADSTVRVWSVTPKKLRKVKSAADLNLIDKESDDVLERIMDEKTSSESK 480
WD40-rpts (_________________WD 2________________)(_____________WD 3____________) (____
Query 481 ILHGHSGPVYGVSFSPDRNYLLSSSEDGTIRLWSLQTFTCLVGYKGHNYPVWDTQFSPFGYYFVSGGHDRVARLWATDHY 560
WD40-rpts _____________WD 4________________) (_________________WD 5________________) (
Query 561 QPLRIFAGHLADVTCTRFHPNSNYVATGSSDRTVRLWDVLNGNCVRIFTGHKGPIHSLAFSPNGKFLASGSTDGRVLLWD 640
WD40-rpts _________________WD 6________________) (_________________WD 7________________)
Query 641 IGHGLMIAELKGHTGTIYALKFSRDGEIIASGSIDNTVRLWDVMRAIDDVETDDFTAATGHIHLPDNSQELLLGTYHSKS 720
WD40-rpts (_________________WD 8________________) (_________________WD 9_____________
Query 721 TAVIHLHFTRRNLLLAAGSYNSQ 743
WD40-rpts ___)
 9 WD40-repeats found in QUERY=ENSDARP00000107159 (Len=743): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 245-317 4.18 287.37 0.00832 15.0% 28.98 WD 2: Seg 6 403-441 7.92 441.88 6.9e-05 30.0% 53.59 WD 3: Seg 10 442-472 4.37 295.02 0.00657 12.5% 42.51 WD 4: Seg 13 476-514 10.01 528.12 4.7e-06 47.5% 54.31 WD 5: Seg 17 518-556 8.90 482.36 2.0e-05 35.0% 53.31 WD 6: Seg 21 560-598 9.90 523.76 5.4e-06 35.0% 49.72 WD 7: Seg 25 602-640 10.75 558.83 1.8e-06 47.5% 55.20 WD 8: Seg 29 644-682 10.12 532.59 4.1e-06 40.0% 53.03 WD 9: Seg 32 686-724 2.77 229.19 0.04959 7.5% 38.39Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 245-317 TSRFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKSQIDSMSGSLAGEARREVNKVKVFY WD 2 403-441 -SICFYTFL---------------------------------NAYQGLTAVDFTDDSSLIAGGFADSTVRVWS WD 3 442-472 ------------------------------------------VTPKKLRKVKSAADLNLIDKESDDVLERIMD WD 4 476-514 -SSESKILH---------------------------------GHSGPVYGVSFSPDRNYLLSSSEDGTIRLWS WD 5 518-556 -FTCLVGYK---------------------------------GHNYPVWDTQFSPFGYYFVSGGHDRVARLWA WD 6 560-598 -YQPLRIFA---------------------------------GHLADVTCTRFHPNSNYVATGSSDRTVRLWD WD 7 602-640 -GNCVRIFT---------------------------------GHKGPIHSLAFSPNGKFLASGSTDGRVLLWD WD 8 644-682 -GLMIAELK---------------------------------GHTGTIYALKFSRDGEIIASGSIDNTVRLWD WD 9 686-724 -AIDDVETD---------------------------------DFTAATGHIHLPDNSQELLLGTYHSKSTAVI WD40 Template TGECLRTLS---------------------------------GHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD |
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