Input parameters:
Query = ENSDARP00000109265 (Len=366)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSDARP00000109265, Len=366):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAGDIILEDEEENILYDLLVNTEWPPETDTQLRGLKEHNSSLVAKAVTGPFRFFLHYLWYSPSSSTLPPGLVRLATKQVN 80
WD40-rpts (_______________WD 1______________)
Query 81 WQLVLASNGKLLAVVQDQCVEIRSARDDFGSIIGKCQVPKDPNPHWRRVAWSHDCALLAYADSTGTVRVFDLMGSELFII 160
WD40-rpts (________________WD 2________________) (______
Query 161 PPAMSFPGDFSYAAAGLMFLEYTGSAQWSAELLVITYSGQLKSYLVSVGTNQGFQENHTFSFSAHYSNGITTAIYHPGHR 240
WD40-rpts ___________________WD 3________________________)(_____________________WD 4______
Query 241 LLLVGGCESGDSDVSRASQCGITAWRVLSGLPHYKQVTSYEDDISSSQRRGFFKMPSFRLFSRHNGEQDGVFRMSLSPDG 320
WD40-rpts ______________) (_________________WD 5_
Query 321 TILAVIHFSGSLSLWDIPSFKLRGSWKQEEQPGFDEINPEWKTSLE 366
WD40-rpts _______________)
5 WD40-repeats found in QUERY=ENSDARP00000109265 (Len=366):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 33-67 6.05 364.38 0.00076 10.0% 22.23
WD 2: Seg 6 114-151 6.28 374.12 0.00056 25.0% 40.26
WD 3: Seg 10 154-208 4.29 292.05 0.00720 12.5% 20.23
WD 4: Seg 13 209-255 5.55 343.97 0.00144 12.5% 36.89
WD 5: Seg 19 298-336 9.21 494.92 1.3e-05 30.0% 49.63
Multiple sequence alignment of 5 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 33-67 ------------RGLKEHNSSLVAKAVT----------------GPFRFFLHYLWYSPSSSTL
WD 2 114-151 -GK-------CQVPKDPNPH-WRRVAWS----------------HDCALLAYADSTGTVRVFD
WD 3 154-208 -GS-------ELFIIPPAMSFPGDFSYAAAGLMFLEYTGSAQWSAELLVITYSGQLKSYLVSV
WD 4 209-255 GTNQGFQENHTFSFSAHYSNGITTAIYH----------------PGHRLLLVGGCESGDSDVS
WD 5 298-336 -FR-------LFSRHNGEQDGVFRMSLS----------------PDGTILAVIHFSGSLSLWD
WD40 Template TGE-------CLRTLSGHTSGVTSVSFS----------------PDGKRLVSGSEDGTIKVWD