WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSDARP00000109373 [Danio rerio] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSDARP00000109373 (Len=1729) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSDARP00000109373, Len=1729): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MIYLCGGYKDTIPERCALMESVYPRLYLHCKQRGYDFKMIDLRAGVGDPDSDRHDLAEMHIETLRRCQDTEGPNFFVFTG 80
WD40-rpts
Query 81 QKHEILSLPNTIPQADFEAVLKLMEKNKKKLYRRQSDMAVESQSCIIPADHNRSFVLERETNLSEEKELSESSAVLSENS 160
WD40-rpts
Query 161 VSSSSVSDREETPLAPSWMDYDQELTLLQTWYKLDTNTVPAVYRLLPVSSNYPDFLSRDGHRRKLGRKAWRSSCVKLRSV 240
WD40-rpts
Query 241 LWRSGPEAIGEEATCRLLRTVLDREVEQGLGGKQPPEEFSHCYKRIITDLLYNLKNEHASQFIDLHKGRPEINQTFHQAQ 320
WD40-rpts
Query 321 QRFIRNIHLKLRHTNIRETNVSWGKKGLSAKHNRSHQFYVDRLCSHFQRTITASLNRHMQVRQPKGSFDMQRKEVSRLKT 400
WD40-rpts
Query 401 QEEIQRHVRFGKTLAQGFAFRQNFLTEVRSALEATSLSLNALLIVGEPGSGKSTTLAKLAQLIPTWIPGDVKVLACFVGL 480
WD40-rpts
Query 481 TSDSRNVRLLLQTLCLQLSNIYSLQTEISESLSELSSDLCSLLGLVTEERPLTLLLDGLDNLSEEHEADLSWLSDILLPH 560
WD40-rpts
Query 561 VFIVVSASTHSKCAHFLQSQVKVSVLSLPALHHEEITSALASRLSSDSRQLTENQWTLLSQSCLSCPSPLYLNLAYAESK 640
WD40-rpts
Query 641 QWSSFTPENNLNIPKDPNQLFINVLVSLEREYGSCLVRRLALLISLSRSGIAEEELLVLLGCDGHVKREMASLHHQTLPG 720
WD40-rpts
Query 721 SKYSPVPYAFVAGLLYSLRDYMTEVESDDTWVLRWTHMEFCCVVLQRYAPTEDSVKAVHADFADYFNGSAPNSQVFQPLA 800
WD40-rpts
Query 801 WIRKERGRRCYVFNLRKLHCLPYHYIHSGQIIPLLTECLFNYEFLLHKLWGLSIYHVQEDLKAAVIVDKDLLDVAVLAQV 880
WD40-rpts
Query 881 LSLSHSVLLNDPCQLASQLLGRLEQIICQDKPVTSGDPRRFSFLHDLLAQCRSSSLPVLVPSYTCLLPPGGLMHTLLSGH 960
WD40-rpts (_____
Query 961 MSAVTALAYGGRHLVSCSSDGKLNLWRLDEQMRPVGALPRAHGCAVDWAADSLTLCLDDTVLVLQMGYCLQVREVHSGKV 1040
WD40-rpts _________WD 1_____________)(_____________________WD 2____________________)(_____
Query 1041 LYVEESLDVPVVTSACDGRLLVIFYDGCHMVKVFNLVSSCSLLFCVNLTLEFEPIHKDQSIVVSRQPAKDYVLFAYRNGG 1120
WD40-rpts _____________WD 3_________________)(_________________WD 4_________________)
Query 1121 EAAVFNAKCGVVSSTLKAQHPAGAIQAVEISSQYLLLFCRYPYKRQSEIIHIELFSAESFQYLRSILGCSQDYISQVTVA 1200
WD40-rpts (____________________
Query 1201 GGGSHIVAFCPAPHHGTTEIIIWNIETEDHKHIARFPGLMTHGECSDLRFCVGFCVGERLLRMWNLGSRINDQTLTYNVH 1280
WD40-rpts WD 5___________________) (_________________WD 6________________)(______________
Query 1281 KVHIDGTAEIVTMQKNPRYVVCRSTRPGTVRIWNVARVRLKGRPVQVEHGLFSSSDIALIRDLKIYILSDLTTSNFTDAA 1360
WD40-rpts ________WD 7_____________________)
Query 1361 VYQTLLVYDLLKKSYIKKQTGLFIVPCPQQDYHLLEGEILLGLSETRDHLILWDLDSGYIKGRIKTSYKESLLLSMDTDS 1440
WD40-rpts (_________________WD 8_
Query 1441 HIMPSKEKTGLVMPWDRRTETQNAKRIRQEREAKRKKDEQKRFEREKFNSIDQYLLSGDEQVVVCSYFAHHLNVFSVISE 1520
WD40-rpts _______________) (_________________WD 9________________) (
Query 1521 EHLHTLEDRWSLLSLRTAAITHNGEHLVVSNYSEAQHAPFLTLWDTQRGMVRKRLKNEPGICCIAVSDDACRVVFGIAGF 1600
WD40-rpts ____________________WD10____________________) (_________________WD11__________
Query 1601 NKLKVWDPFRRKHKNISGYGSLNLNWSSQLFITEGQSRAILLSGAVSMWDLDNGTLLSVFTPDSKIQSISLLGPSNGTLL 1680
WD40-rpts ______) (__________________WD12_________________) (_________________WD13_____
Query 1681 LGFSDMSTLITMLVSQQNAHTKSSTACGKDLFGESSSSEDEEHELANQS 1729
WD40-rpts ___________)
 13 WD40-repeats found in QUERY=ENSDARP00000109373 (Len=1729): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 16 955-987 5.67 348.93 0.00123 40.0% 45.07 WD 2: Seg 19 988-1034 3.44 256.73 0.02140 12.5% 41.08 WD 3: Seg 22 1035-1075 4.79 312.59 0.00381 17.5% 45.30 WD 4: Seg 26 1076-1115 5.60 345.87 0.00136 10.0% 48.81 WD 5: Seg 35 1180-1224 4.78 311.91 0.00389 20.0% 47.21 WD 6: Seg 39 1227-1265 5.62 346.84 0.00132 10.0% 38.61 WD 7: Seg 42 1266-1314 5.92 359.40 0.00089 17.5% 44.43 WD 8: Seg 54 1418-1456 7.31 416.53 0.00015 17.5% 38.62 WD 9: Seg 58 1478-1516 6.22 371.40 0.00061 15.0% 44.27 WD10: Seg 61 1520-1565 5.52 342.55 0.00150 25.0% 57.16 WD11: Seg 65 1569-1607 5.51 342.14 0.00152 30.0% 49.58 WD12: Seg 69 1610-1650 3.63 264.52 0.01684 20.0% 46.22 WD13: Seg 73 1654-1692 6.70 391.61 0.00033 15.0% 57.01Multiple sequence alignment of 13 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 955-987 T------------LLS--------GHMS----A-VTALAY--GGRH--L-VSCS-----SD-GK-----LNLWR WD 2 988-1034 LDE-------QMRPVGALPRAHGCAVDW----A-ADSLTLCLDDT---V-LVLQ-----MG-YC-----LQVRE WD 3 1035-1075 VHS-------GKVLYV--------EESL----D-VPVVTSACDGRL--LVIFYD-----GC-HM-----VKVFN WD 4 1076-1115 LVS-------SCSLLF--------CVNL----T-LEFEPIHKDQSI--V-VSRQ-----PA-KD-----YVLFA WD 5 1180-1224 -FQ-------YLRSIL--------GCSQ----DYISQVTVAGGGSH--I-VAFCPAPHHGT-TE-----IIIWN WD 6 1227-1265 -TE-------DHKHIA--------RFPG----L-MTHGECSDLRFC--V-GFCV-----GE-RL-----LRMWN WD 7 1266-1314 LGSRINDQTLTYNVHK--------VHID----G-TAEIVTMQKNPRYVV-CRST-----RP-GT-----VRIWN WD 8 1418-1456 -GY-------IKGRIK--------TSYK----E-SLLLSMDTDSHI--M-PSKE-----KT-GL-----VMPWD WD 9 1478-1516 -DE-------QKRFER--------EKFN----S-IDQYLLSGDEQV--V-VCSY-----FA-HH-----LNVFS WD10 1520-1565 -EE-------HLHTLE--------DRWS--LLS-LRTAAITHNGEH--L-VVSN-----YS-EAQHAPFLTLWD WD11 1569-1607 -GM-------VRKRLK--------NEP-----G-ICCIAVSDDACR--V-VFGI-----AGFNK-----LKVWD WD12 1610-1650 -RR-------KHKNIS--------GYGSLNLNW-SSQLFITEGQSR--A-ILLS--------GA-----VSMWD WD13 1654-1692 -GT-------LLSVFT--------PDSK----I-QSISLLGPSNGT--L-LLGF-----SD-MS-----TLITM WD40 Template TGE-------CLRTLS--------GHTS----G-VTSVSFSPDGKR--L-VSGS-----ED-GT-----IKVWD |
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