Input parameters:
Query = ENSDARP00000110304 (Len=722)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSDARP00000110304, Len=722):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MQVSSVNNVKIYNLSHGKSLPEWLSDRKKRVLQKKDVDIQRRIELIQDFEMPTVCTSIRVSRDGQYILAAGTYKPRVRCY 80
WD40-rpts (__________________WD 1_________________
Query 81 DTYQLSLKFERCLDSDVVTFDILSDDYSKLVFLHIDRYVEFHSQHGHYYKTRIPKFGRDFSYHSPSCDLYFVGASSEVFR 160
WD40-rpts )(__________________WD 2__________________)
Query 161 LNLEQGRFLNSLQTDAAEMNVCDINPVHQLFAAGTLEGRVDCWDPRVRTRVAVLDCALSSITDNTEVEGLPSVSALKFND 240
WD40-rpts (_________________WD 3________________) (__________________WD 4__
Query 241 SLGLAVGTSTGQILVYDLRSSRPLLVKDHYYGLPIKSLHFHNSLDLVLSADSKIIKMWNKDNGKVFSSIEPQANINDVCL 320
WD40-rpts ________________)(__________________WD 5__________________)
Query 321 YPASGMLFTANEDPKMNTFYIPALGPAPRWCSFLDNLTEELEENPESTIYDDYKFVTRKDLESLGLAHLIGSPLLRAYMH 400
WD40-rpts
Query 401 GFFMDIRLYHKVKTMVNPFAYEEYRKDKIRQKIEESRAQRVQLKKLPKVNKELALKLMEEDTELTNKKKKKKANVAGNLL 480
WD40-rpts
Query 481 MDERFKVMFENPDYQVDERSEEFRLLNPIISTVAERRRKSLLEEEQEQAEEEQEPEGRGSSEDDSSDEDDKGWVQEVREQ 560
WD40-rpts
Query 561 RRLLRMEERERSYIQRQERRQQDRNTRLQSSDTHTQQSHGAQQPRFYQIKSGEEFRSFSDVSRKQKTHKASLEERLQRLE 640
WD40-rpts
Query 641 KSDTLSLNDTAVGSKQLTFTLKKTEKQRFQQQAERDHHEERRRIRRSAGHLHSNRGGGRGRGGGRGRGGGRGRGGGRGRR 720
WD40-rpts
Query 721 PF 722
WD40-rpts
5 WD40-repeats found in QUERY=ENSDARP00000110304 (Len=722):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 41-81 4.18 287.48 0.00829 20.0% 42.03
WD 2: Seg 6 82-123 3.66 266.05 0.01606 20.0% 46.03
WD 3: Seg 13 166-204 6.38 378.21 0.00050 20.0% 38.40
WD 4: Seg 18 216-257 3.67 266.36 0.01591 30.0% 27.23
WD 5: Seg 21 258-299 2.86 232.60 0.04471 17.5% 43.56
Multiple sequence alignment of 5 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 41-81 RRI---ELIQDFEMPTV--CTSIRVSR--DGQYILAAGTYKPRVRCYD
WD 2 82-123 TYQ---LSLKFERCLDSDVVTFDILSD--DYSKL-VFLHIDRYVEFHS
WD 3 166-204 -GR---FLNSLQTDAAE--MNVCDINP--VHQLF-AAGTLEGRVDCWD
WD 4 216-257 CAL---SSITDNTEVEG--LPSVSALKFNDSLGL-AVGTSTGQILVYD
WD 5 258-299 LRSSRPLLVKDHYYGLP--IKSLHFHN--SLDLV-LS-ADSKIIKMWN
WD40 Template TGE---CLRTLSGHTSG--VTSVSFSP--DGKRL-VSGSEDGTIKVWD