Input parameters:

  Query = ENSDARP00000110907 (Len=297)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000110907, Len=297):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPWLGGLQTGRGAAVLIKRNINNVRRMTSHPTLPYYLTGAQDGSVRMFEWGHSQQITCYRSPGNSRVTRIRFNYQGNKFG 80  
WD40-rpts              (__________________WD 1_________________)(___________________WD 2_______

Query       81 IVDGDGALSLWQTSTSGNAPKPYLTLQCHNKTANDFVFVGSSSLIATAGLSTDNRNVCLWDTLVTPAYSLVHGFVCHDSG 160 
WD40-rpts      ___________)       (__________________WD 3__________________)      (____________

Query      161 STALALACKQQLLLSGGRRGFITLLDLSVKLQRQSFQAHDSPVKALAVDSSESCFISGSAEGNIKVWSMNTQSLLHSFIN 240 
WD40-rpts      _____WD 4________________)   (_________________WD 5________________)          (_

Query      241 EHSRQSLFRNLGTGVMQIEAAPANQLFSCGADGTMKMRVLPDALSGSGGRNDVRFIM 297 
WD40-rpts      _________________WD 6_________________)                  

6 WD40-repeats found in QUERY=ENSDARP00000110907 (Len=297):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     9-49       7.83  437.97  7.8e-05       20.0%     55.87
  WD 2:  Seg  5    50-92       8.30  457.44  4.3e-05       25.0%     56.84
  WD 3:  Seg  9   100-141      7.37  418.96  0.00014       15.0%     48.68
  WD 4:  Seg 13   148-186      8.75  476.10  2.4e-05       25.0%     49.73
  WD 5:  Seg 17   190-228      9.56  509.39  8.5e-06       27.5%     55.34
  WD 6:  Seg 22   239-279      6.91  399.90  0.00025       25.0%     45.25

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    9-49     TG---RGAA--VLIKRNINNVRRMTSHPTLPYYLTG---AQDGSVRMFE
   WD 2   50-92     WGHSQQITC--YR-SPGNSRVTRIRFNYQGNKFGIV---DGDGALSLWQ
   WD 3  100-141    -P---KPYL--TL-QCHNKTANDFVFVGSSSLIATAGLSTDNRNVCLWD
   WD 4  148-186    -Y---SLVH--GF-VCHDSGSTALALACKQQLLLSG---GRRGFITLLD
   WD 5  190-228    -K---LQRQ--SF-QAHDSPVKALAVDSSESCFISG---SAEGNIKVWS
   WD 6  239-279    IN---EHSRQSLF-RNLGTGVMQIEAAPANQLFSCG---A-DGTMKMRV

   WD40 Template    TG---ECLR--TL-SGHTSGVTSVSFSPDGKRLVSG---SEDGTIKVWD