Input parameters:

  Query = ENSDARP00000111097 (Len=481)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000111097, Len=481):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 QQTQESRSCQTRPVHTTETETQAKDVSENGTQTQDQSGQTLSLDRDLTDFPGLLDFMRRAEDVVIRELVKNSKSHAFDGF 80  
WD40-rpts                                                                                      

Query       81 EVNWEEQNESVSCMYRLQHVDAQEKSLQVTSVSWNCTGSVIACGFGRVDDGDWSNEKACVCTWNVDRQNLNPKRPDVIID 160 
WD40-rpts                                                                      (_______________

Query      161 VATPVMCLCFHPVRPSVVAGGLYSGEVVVWDTSRSQDLILAQTGMSADTHREPVYQINWVPGARRGEFSVLSAGSGGRVL 240 
WD40-rpts      ______WD 1____________________)         (___________________WD 2________________

Query      241 LWTIDGSEAKLLLSSGYALVRQQMPQSGAASKTRGSLTIGVTAVALSPWDLDTFLVGSEGGLVLKCSFSSETAAAVPSDG 320 
WD40-rpts      __)                                             (_________________WD 3__________

Query      321 ESVILRAPMQFSFSPRGGPIHSVHFSPFHRNLFVSVGTDGLAHLHSVLQPCPLLALRVSDSYVFGVRWSPTRPLVFAAVT 400 
WD40-rpts      ______)_________________WD 4_________________)(___________________WD 5__________

Query      401 GQGLVQMFDLGRRSLRPVATIDQNAGGQPAYCLEFNPKHTNLLAVGNADGSVNIWQLSAELTEQGAKETAMLEQLANEVA 480 
WD40-rpts      ________)(_____________________WD 6____________________)                        

Query      481 D 481 
WD40-rpts       

6 WD40-repeats found in QUERY=ENSDARP00000111097 (Len=481):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   145-191      3.18  245.96  0.02976       20.0%     44.99
  WD 2:  Seg 11   201-243      4.71  309.09  0.00425       17.5%     38.72
  WD 3:  Seg 17   289-327      2.84  231.84  0.04576       10.0%     33.50
  WD 4:  Seg 20   327-366      5.08  324.66  0.00262       27.5%     47.76
  WD 5:  Seg 24   367-409      4.04  281.62  0.00993       22.5%     54.91
  WD 6:  Seg 28   410-456      3.55  261.47  0.01849       20.0%     57.59

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  145-191    VDRQNLNPK------RPDVIIDVATPVMCLCFHPVRPSV----V-AGGLYSGEVVVWD
   WD 2  201-243    -A------Q------TGMSADTHREPVYQINWVP-GARRGEFSV-LSAGSGGRVLLWT
   WD 3  289-327    -W------D------LDTFLVGSEGGLVLKCSFS-SETA----A-AVPSDGESVILRA
   WD 4  327-366    -A------P------MQFSFSPRGGPIHSVHFSP-FHRN----LFVSVGTDGLAHLHS
   WD 5  367-409    VL------Q----PCPLLALRVSDSYVFGVRWSP-TRPL----VFAAVTGQGLVQMFD
   WD 6  410-456    LG------RRSLRPVATIDQNAGGQPAYCLEFNPKHTNL----L-AVGNADGSVNIWQ

   WD40 Template    TG------E------CLRTLSGHTSGVTSVSFSP-DGKR----L-VSGSEDGTIKVWD