Input parameters:

  Query = ENSDARP00000111616 (Len=845)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000111616, Len=845):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 GHPEYIFPLVLTSVSQELFGCRADEDVTAENPHKLLKKQDIIQDLRHRAAVCDFSPVKQAVLDYPEDELLLVFDRDFIYG 80  
WD40-rpts                                                                                      

Query       81 QSFYLVLTVQAKESILKPPAEGADEQMEDEEQQEEEEEMMTKTPEPQPWVSLGSEHSVICVRQLRYSVCPLGRRSGTRVR 160 
WD40-rpts                                                                                      

Query      161 FSDRNALDWKEELVECSSYEDKSFSLRYTIVEHHLLKIFKKMMNICQEKKPKNMWSQYEPREFSSEEKQHQLQSENLKNF 240 
WD40-rpts                                                                                      

Query      241 ITSVARRFEIYLQQNLIADVFCDDWTALCEDDASLMGKTETQLKEYQSFMDLHFSKEKTISHVQWHPSISGVIVVSMMER 320 
WD40-rpts                                                                                      

Query      321 LSLEERIDSSTKLLLNPSHILFWSFSDPINPQQLQLECPDDVLCFQFSPSDHNIIAGGCMNGQVVLWDISAHVDRLQDTR 400 
WD40-rpts                              (___________________WD 1___________________)            

Query      401 SGGKNIHPFEGKSDATPVVRYCAVSGIENGHKAPITDIQWLPETFEVNKLGTPVENQSRTSVQLVTCAPDCCVLFWDLRA 480 
WD40-rpts                                              (________________WD 2_______________)   

Query      481 PRVMVHSLTDIKQKQEEKPLENPHGVPNTFTHLNLTWKPFIRVSLPKISSSGEYSPLRFSMRENTVDYNTGNKLKCHKSD 560 
WD40-rpts                                                                                      

Query      561 KSVSGADSRVFAQLRMQSAKQQKPLQNISTKLYIATEDGELVYTDWKVEKDNDSGRMLSAKPLDVFLLQDTLLHTVSRSP 640 
WD40-rpts                                                                 (_________________WD 

Query      641 FFRDIILTVGRFSFSIWREGLTCGPLLMSVYSKSMFSAGHWSRSRPAVLFMGREDGDVEVWDLLQNSRQPSHTQNISTAA 720 
WD40-rpts      3________________)(___________________WD 4___________________)(_________________

Query      721 ISCIRTQTSSAKQNLLAVSDRLGTLHILQIPGSLRRSSSSERQNVEKYFEKEEERLQYFEKRQSDHQKKKKETEAEQQKK 800 
WD40-rpts      ____WD 5____________________)                                                   

Query      801 KTELVTPPKQEEEVNAETLKEYQQFLTLEKLILKDMNIQNETQQT 845 
WD40-rpts                                                   

5 WD40-repeats found in QUERY=ENSDARP00000111616 (Len=845):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 11   345-388      4.21  288.64  0.00800       22.5%     37.70
  WD 2:  Seg 17   441-477      4.08  283.09  0.00949       22.5%     23.28
  WD 3:  Seg 26   620-658      3.81  272.02  0.01336       15.0%     45.71
  WD 4:  Seg 30   659-702      4.24  289.94  0.00768       30.0%     53.13
  WD 5:  Seg 34   703-749      2.88  233.67  0.04329       17.5%     33.18

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  345-388    FS---DPINPQQ----LQLECPDDVLCFQFSPSDHNI-IAGGCMNGQVVLWD
   WD 2  441-477    LP---E---TFE-------VNKLGTPVENQSR-TSVQ-LVTCAPDCCVLFWD
   WD 3  620-658    -A---KPLDVFL-------LQDTLLHTVSRSP-FFRD-IILTVGRFSFSIWR
   WD 4  659-702    EGLTCGPLLMSV-------YSKSMFSAGHWSR-SRPAVLFMGREDGDVEVWD
   WD 5  703-749    LL---QNSRQPSHTQNISTAAISCIRTQTSSA-KQNL-LAVSDRLGTLHILQ

   WD40 Template    TG---ECLRTLS-------GHTSGVTSVSFSP-DGKR-LVSGSEDGTIKVWD