Input parameters:

  Query = ENSDARP00000111824 (Len=452)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000111824, Len=452):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSASDEHTLPQEEEDEFEDMEASESDEDDMEGEEQNGDGQEKVYVPGLQPLQPGEELEMDHSAYRMYHECQTGAPCLSFD 80  
WD40-rpts                                                                                      

Query       81 VVLDGEGDRREQFPLSMVLCAGTQADTALSNRLIVMRMHNLQGTEKKKDEDKSSDEESDEDEDDEDEDKKPQLELAMMPH 160 
WD40-rpts                                                                                   (__

Query      161 YGGINRVRVTQRGEQTLAAVWSEKGQVEIFDLRLQLEAVHNSTAMSAFIKQEKEATPLFSFAGHMSEGFAIDWSPKVPGR 240 
WD40-rpts      ____________WD 1______________)                       (_________________WD 2____

Query      241 MVSGDCKKNIHVWEPQEGGTWKIDQRPFSSHSKSVEDLQWSPTEATVFASCSVDQSIRIWDIRAPPNSMLSANEAHSSDV 320 
WD40-rpts      _____________)(_____________________WD 3____________________)     (_____________

Query      321 NVISWNRTEPFILSGGDDGLLKVWDLRQFQSGRPVASFKQHSAPVTSVQWSPVDSSVFAASGADDVISQWDLSVESCDMG 400 
WD40-rpts      ____WD 4________________)      (_________________WD 5_________________)         

Query      401 GQAEDVKQLPPQLLFLHQGQKEVKELHWHPQIPGVLISTALSGFNIFRTISV 452 
WD40-rpts                                                          

5 WD40-repeats found in QUERY=ENSDARP00000111824 (Len=452):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   158-191      3.57  262.08  0.01815       20.0%     42.24
  WD 2:  Seg 10   215-254      6.09  366.10  0.00072       32.5%     49.84
  WD 3:  Seg 14   255-301      6.46  381.71  0.00045       32.5%     46.48
  WD 4:  Seg 16   307-345      7.89  440.45  7.2e-05       32.5%     49.18
  WD 5:  Seg 20   352-391      7.24  413.87  0.00016       32.5%     52.25

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  158-191    --------------MPHYGGINRVRVTQ-RGE-QTLAAVWSEKGQVEIFD
   WD 2  215-254    -AT------PLFSFAGHMSEGFAIDWSP-KVPGR--MVSGDCKKNIHVWE
   WD 3  255-301    PQEGGTWKIDQRPFSSHSKSVEDLQWSPTEAT-V--FASCSVDQSIRIWD
   WD 4  307-345    -NS------MLSANEAHSSDVNVISWNR-TEP-F--ILSGGDDGLLKVWD
   WD 5  352-391    -GR------PVASFKQHSAPVTSVQWSPVDSS-V--FAASGADDVISQWD

   WD40 Template    TGE------CLRTLSGHTSGVTSVSFSP-DGK-R--LVSGSEDGTIKVWD