Input parameters:
Query = ENSP00000006951 (Len=201)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000006951, Len=201):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MVLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDVNEELDKKYAGLLEKKWTSVIRLQKKVMELESKLNEAKEEFT 80
WD40-rpts (_______________WD 1______________) (_______________WD 2_
Query 81 SGGPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKDNMTIKLWDFQGFECIRTMHGHDHNVS 160
WD40-rpts ______________) (____________________WD 3___________________) (______________
Query 161 SVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWV 201
WD40-rpts ___WD 4________________)
4 WD40-repeats found in QUERY=ENSP00000006951 (Len=201):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 22-56 3.72 268.19 0.01504 12.5% 13.17
WD 2: Seg 2 60-95 2.90 234.62 0.04206 7.5% 16.20
WD 3: Seg 4 98-142 8.74 475.85 2.4e-05 50.0% 43.73
WD 4: Seg 7 146-184 10.82 561.60 1.7e-06 47.5% 54.96
Multiple sequence alignment of 4 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 22-56 ---------NGYEEAYSVFKKEAELDVNEELDKKYAGLLEK------KWT
WD 2 60-95 RLQKKVMELESKLNEAKEEFTSG---GPLGQKRDP-----K------EWI
WD 3 98-142 PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATI-----KDNMTIKLWD
WD 4 146-184 FECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTI-----K------MWE
WD40 Template GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTI-----K------VWD