WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000006951    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000006951 (Len=201)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000006951, Len=201):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDVNEELDKKYAGLLEKKWTSVIRLQKKVMELESKLNEAKEEFT 80  
WD40-rpts                           (_______________WD 1______________)   (_______________WD 2_

Query       81 SGGPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKDNMTIKLWDFQGFECIRTMHGHDHNVS 160 
WD40-rpts      ______________)  (____________________WD 3___________________)   (______________

Query      161 SVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWV 201 
WD40-rpts      ___WD 4________________)                 



4 WD40-repeats found in QUERY=ENSP00000006951 (Len=201):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    22-56       3.72  268.19  0.01504       12.5%     13.17
  WD 2:  Seg  2    60-95       2.90  234.62  0.04206        7.5%     16.20
  WD 3:  Seg  4    98-142      8.74  475.85  2.4e-05       50.0%     43.73
  WD 4:  Seg  7   146-184     10.82  561.60  1.7e-06       47.5%     54.96
Multiple sequence alignment of 4 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   22-56     ---------NGYEEAYSVFKKEAELDVNEELDKKYAGLLEK------KWT
   WD 2   60-95     RLQKKVMELESKLNEAKEEFTSG---GPLGQKRDP-----K------EWI
   WD 3   98-142    PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATI-----KDNMTIKLWD
   WD 4  146-184    FECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTI-----K------MWE

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTI-----K------VWD


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Last modified: 09 Jan 2019