WDRR: WD40 Repeat Recognition
[HOME]   [JOB LIST]   [PRE-CALCULATED RESULTS]   [VISITORS]   [ABOUT]

Pre-calculated Results - Accession: ENSP00000176195    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000176195 (Len=121)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000176195, Len=121):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAPRPLLLLLLLLGGSAARPAPPRARRHSDGTFTSELSRLREGARLQRLLQGLVGKRSEQDAENSMAWTRLSAGLLCPSG 80  
WD40-rpts      (_______________________________________________WD 1____________________________

Query       81 SNMPILQAWMPLDGTWSPWLPPGPMVSEPAGAAAEGTLRPR 121 
WD40-rpts      ___________________)                     



1 WD40-repeats found in QUERY=ENSP00000176195 (Len=121):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-100      2.81  230.75  0.04730       25.0%     -6.54
Multiple sequence alignment of 1 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    1-100    MAPRPLLLLLLLLGGSAARPAPPRARRHSDGTFTSELSRLREGARLQRLLQGLVGKRSEQDAENSMAWTRLSAGLLCPSGSNMPILQAWMPLDGTWSPWL

   WD40 Template    TGE-----------------CLRTLSGHTSGV-----------------------TSV----------SFSPDGKRLVSGSE----------DGTIKVWD


Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University
Powered and maintained by Chuan Wang
Last modified: 09 Jan 2019