WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSP00000217964 [Homo sapiens] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSP00000217964 (Len=577) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSP00000217964, Len=577): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MTELAGASSSCCHRPAGRGAMQSVLHHFQRLRGREGGSHFINTSSPRGEAKMSITSDEVNFLVYRYLQESGFSHSAFTFG 80
WD40-rpts (__________
Query 81 IESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEDGTVFDGRPIESLSLIDAVMPDVVQTRQQAFREKLAQQQAS 160
WD40-rpts ________________________________WD 1_________________________________________)
Query 161 AAAAAAAATAAATAATTTSAGVSHQNPSKNREATVNGEENRAHSVNNHAKPMEIDGEVEIPSSKATVLRGHESEVFICAW 240
WD40-rpts (_________________WD 2________________) (_____________
Query 241 NPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDVPSNKDVTSLDWNTNGTLLATGSYDGFARIWTEDGN 320
WD40-rpts _WD 3______________) (________________WD 4________________) (_
Query 321 LASTLGQHKGPIFALKWNRKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLG 400
WD40-rpts ________________WD 5________________) (________________WD 6________________)
Query 401 CDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQEVCIHDLQAHNKEIYTIKWSPTGPATSNPNSNIMLAS 480
WD40-rpts (_________________WD 7________________) (_____________________WD 8___________
Query 481 ASFDSTVRLWDIERGVCTHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGNLVHSYRGTGGIFEVCWNARGDK 560
WD40-rpts __________) (_________________WD 9________________) (________________WD10___
Query 561 VGASASDGSVCVLDLRK 577
WD40-rpts _____________)
 10 WD40-repeats found in QUERY=ENSP00000217964 (Len=577): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 70-158 2.96 237.06 0.03905 15.0% 10.97 WD 2: Seg 4 175-213 6.80 395.42 0.00029 10.0% 24.45 WD 3: Seg 7 227-260 8.70 473.84 2.6e-05 32.5% 43.99 WD 4: Seg 11 279-316 7.58 427.67 0.00011 25.0% 39.25 WD 5: Seg 14 319-357 9.43 504.12 1.0e-05 25.0% 53.87 WD 6: Seg 18 361-398 6.91 400.03 0.00025 22.5% 52.76 WD 7: Seg 22 402-440 10.10 531.67 4.2e-06 35.0% 55.26 WD 8: Seg 26 444-491 8.31 458.11 4.2e-05 32.5% 54.04 WD 9: Seg 30 495-533 10.81 561.01 1.7e-06 50.0% 55.19 WD10: Seg 34 537-574 7.74 434.52 8.7e-05 22.5% 55.63Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 70-158 SGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEDGTVFDGR---------PIESLSLIDAVMPDVVQTRQQAFREKLAQQQ WD 2 175-213 -ATTT-------------SAGVSHQNP--------------------SKNREATVNGE---------ENRAHSVNNHAKP----------------ME WD 3 227-260 -------------------VLRGHESE--------------------VFICAWNPVSD---------LLASGSGDSTARI----------------WN WD 4 279-316 REG---------------GHDVPSNKD--------------------VTSLDWNTNGT---------LLATGSYDGFARI----------------WT WD 5 319-357 -GNLA-------------STLGQHKGP--------------------IFALKWNRKGN---------YILSAGVDKTTII----------------WD WD 6 361-398 -GEAK-------------QQFPFHSAP--------------------ALDVDWQ-NNT---------TFASCSTDMCIHV----------------CR WD 7 402-440 -DRPV-------------KTFQGHTNE--------------------VNAIKWDPSGM---------LLASCSDDMTLKI----------------WS WD 8 444-491 -EVCI-------------HDLQAHNKE--------------------IYTIKWSPTGPATSNPNSNIMLASASFDSTVRL----------------WD WD 9 495-533 -GVCT-------------HTLTKHQEP--------------------VYSVAFSPDGK---------YLASGSFDKCVHI----------------WN WD10 537-574 -GNLV-------------HSYRGT-GG--------------------IFEVCWNARGD---------KVGASASDGSVCV----------------LD WD40 Template TGECL-------------RTLSGHTSG--------------------VTSVSFSPDGK---------RLVSGSEDGTIKV----------------WD |
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