Input parameters:
Query = ENSP00000226193 (Len=200)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000226193, Len=200):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MGNSKSGALSKEILEELQLNTKFSEEELCSWYQSFLKDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHVFRSFDSNLDGT 80
WD40-rpts (_________________________________________________________________WD 1__________
Query 81 LDFKEYVIALHMTTAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDENTPEKRAEKIWKYFG 160
WD40-rpts ______________________________________________________)
Query 161 KNDDDKLTEKEFIEGTLANKEILRLIQFEPQKVKEKMKNA 200
WD40-rpts
1 WD40-repeats found in QUERY=ENSP00000226193 (Len=200):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-135 2.80 230.12 0.04820 25.0% -13.44
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-135 MGNSKSGALSKEILEELQLNTKFSEEELCSWYQSFLKDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHVFRSFDSNLDGTLDFKEYVIALHMTTAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVMAIFKMITP
WD40 Template TGECLRTLSG-------------H----------------TSGVT-----------SVSFSP---------------DGKRL-----------VSGS---------------EDGTIK--------------VWD