Input parameters:
Query = ENSP00000227524 (Len=504)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000227524, Len=504):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSLICSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLIDIKVAHPIRPKPPSATSIPAILKALQD 80
WD40-rpts
Query 81 EWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQAGLIVPQAVPSSQPSVVGAGEPM 160
WD40-rpts (______________WD 1________
Query 161 DLGELVGMTPEIIQKLQDKATVLTTERKKRGKTVPEELVKPEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTG 240
WD40-rpts _____) (_________________WD 2________
Query 241 GADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQDLVFSASPDATIRIWSVPNASCVQVVRAHESAVTGLSLHATGDY 320
WD40-rpts _________) (_________________WD 3________________) (_________________WD 4___
Query 321 LLSSSDDQYWAFSDIQTGRVLTKVTDETSGCSLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAF 400
WD40-rpts _____________) (__________________WD 5_________________) (_________________W
Query 401 SENGYYLATAADDSSVKLWDLRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTEILHFTEHSGLTTG 480
WD40-rpts D 6________________) (_________________WD 7_________________)(________________
Query 481 VAFGHHAKFIASTGMDRSLKFYSL 504
WD40-rpts _WD 8_________________)
8 WD40-repeats found in QUERY=ENSP00000227524 (Len=504):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 134-166 4.86 315.41 0.00349 7.5% 18.46
WD 2: Seg 5 211-250 5.92 359.03 0.00090 20.0% 47.23
WD 3: Seg 9 254-292 10.11 532.13 4.2e-06 45.0% 56.86
WD 4: Seg 13 296-334 9.00 486.29 1.7e-05 30.0% 58.22
WD 5: Seg 17 338-378 8.37 460.48 3.9e-05 40.0% 58.20
WD 6: Seg 21 382-420 9.72 516.13 6.9e-06 30.0% 49.31
WD 7: Seg 24 424-463 6.12 367.35 0.00070 25.0% 50.31
WD 8: Seg 28 464-503 9.72 516.17 6.9e-06 20.0% 57.59
Multiple sequence alignment of 8 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 134-166 -------LKPQAG-L--IVPQAVPS-SQPSVVGAGEPMDLGELV
WD 2 211-250 -ASHVGLHSASIP-G--ILALDLCPSDTNKILTGGADKNVVVFD
WD 3 254-292 -EQILATLKGHTK-K--VTSVVFHP-SQDLVFSASPDATIRIWS
WD 4 296-334 -ASCVQVVRAHES-A--VTGLSLHA-TGDYLLSSSDDQYWAFSD
WD 5 338-378 -GRVLTKVTDETS-GCSLTCAQFHP-DGLIFGTGTMDSQIKIWD
WD 6 382-420 -RTNVANFPGHSG-P--ITSIAFSE-NGYYLATAADDSSVKLWD
WD 7 424-463 -LKNFKTLQLDNNFE--VKSLIFDQ-SGTYLALGGTDVQIYICK
WD 8 464-503 QWTEILHFTEHSG-L--TTGVAFGH-HAKFIASTGMDRSLKFYS
WD40 Template TGECLRTLSGHTS-G--VTSVSFSP-DGKRLVSGSEDGTIKVWD