WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000227524    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000227524 (Len=504)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000227524, Len=504):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSLICSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLIDIKVAHPIRPKPPSATSIPAILKALQD 80  
WD40-rpts                                                                                      

Query       81 EWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQAGLIVPQAVPSSQPSVVGAGEPM 160 
WD40-rpts                                                           (______________WD 1________

Query      161 DLGELVGMTPEIIQKLQDKATVLTTERKKRGKTVPEELVKPEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTG 240 
WD40-rpts      _____)                                            (_________________WD 2________

Query      241 GADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQDLVFSASPDATIRIWSVPNASCVQVVRAHESAVTGLSLHATGDY 320 
WD40-rpts      _________)   (_________________WD 3________________)   (_________________WD 4___

Query      321 LLSSSDDQYWAFSDIQTGRVLTKVTDETSGCSLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAF 400 
WD40-rpts      _____________)   (__________________WD 5_________________)   (_________________W

Query      401 SENGYYLATAADDSSVKLWDLRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTEILHFTEHSGLTTG 480 
WD40-rpts      D 6________________)   (_________________WD 7_________________)(________________

Query      481 VAFGHHAKFIASTGMDRSLKFYSL 504 
WD40-rpts      _WD 8_________________) 



8 WD40-repeats found in QUERY=ENSP00000227524 (Len=504):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   134-166      4.86  315.41  0.00349        7.5%     18.46
  WD 2:  Seg  5   211-250      5.92  359.03  0.00090       20.0%     47.23
  WD 3:  Seg  9   254-292     10.11  532.13  4.2e-06       45.0%     56.86
  WD 4:  Seg 13   296-334      9.00  486.29  1.7e-05       30.0%     58.22
  WD 5:  Seg 17   338-378      8.37  460.48  3.9e-05       40.0%     58.20
  WD 6:  Seg 21   382-420      9.72  516.13  6.9e-06       30.0%     49.31
  WD 7:  Seg 24   424-463      6.12  367.35  0.00070       25.0%     50.31
  WD 8:  Seg 28   464-503      9.72  516.17  6.9e-06       20.0%     57.59
Multiple sequence alignment of 8 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1  134-166    -------LKPQAG-L--IVPQAVPS-SQPSVVGAGEPMDLGELV
   WD 2  211-250    -ASHVGLHSASIP-G--ILALDLCPSDTNKILTGGADKNVVVFD
   WD 3  254-292    -EQILATLKGHTK-K--VTSVVFHP-SQDLVFSASPDATIRIWS
   WD 4  296-334    -ASCVQVVRAHES-A--VTGLSLHA-TGDYLLSSSDDQYWAFSD
   WD 5  338-378    -GRVLTKVTDETS-GCSLTCAQFHP-DGLIFGTGTMDSQIKIWD
   WD 6  382-420    -RTNVANFPGHSG-P--ITSIAFSE-NGYYLATAADDSSVKLWD
   WD 7  424-463    -LKNFKTLQLDNNFE--VKSLIFDQ-SGTYLALGGTDVQIYICK
   WD 8  464-503    QWTEILHFTEHSG-L--TTGVAFGH-HAKFIASTGMDRSLKFYS

   WD40 Template    TGECLRTLSGHTS-G--VTSVSFSP-DGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019