Input parameters:
Query = ENSP00000229264 (Len=340)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000229264, Len=340):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MGEMEQLRQEAEQLKKQIADARKACADVTLAELVSGLEVVGRVQMRTRRTLRGHLAKIYAMHWATDSKLLVSASQDGKLI 80
WD40-rpts (_________________WD 1______________
Query 81 VWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNMCSIYNLKSREGNVKVSRELSAHTGYLSCCRFLDDNNIVTS 160
WD40-rpts __) (_________________WD 2________________) (________________WD 3_______
Query 161 SGDTTCALWDIETGQQKTVFVGHTGDCMSLAVSPDFNLFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNGEA 240
WD40-rpts _________) (_________________WD 4________________) (_________________WD 5___
Query 241 ICTGSDDASCRLFDLRADQELICFSHESIICGITSVAFSLSGRLLFAGYDDFNCNVWDSMKSERVGILSGHDNRVSCLGV 320
WD40-rpts _____________) (__________________WD 6_________________) (_________________W
Query 321 TADGMAVATGSWDSFLKIWN 340
WD40-rpts D 7________________)
7 WD40-repeats found in QUERY=ENSP00000229264 (Len=340):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 3 45-83 10.09 531.46 4.3e-06 40.0% 52.70
WD 2: Seg 7 87-125 8.73 475.19 2.5e-05 15.0% 56.77
WD 3: Seg 11 133-170 7.60 428.59 0.00010 32.5% 48.53
WD 4: Seg 15 174-212 9.93 524.96 5.2e-06 35.0% 56.70
WD 5: Seg 19 216-254 10.40 544.37 2.9e-06 32.5% 51.34
WD 6: Seg 23 258-298 8.26 456.06 4.4e-05 37.5% 57.73
WD 7: Seg 27 302-340 9.89 523.30 5.5e-06 32.5% 51.14
Multiple sequence alignment of 7 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 45-83 MRTRRTLRGHL--AKIYAMHWATDSKLLVSASQDGKLIVWD
WD 2 87-125 TNKVHAIPLRS--SWVMTCAYAPSGNFVACGGLDNMCSIYN
WD 3 133-170 VKVSRELSAHT--GYLSCCRFLDDNN-IVTSSGDTTCALWD
WD 4 174-212 GQQKTVFVGHT--GDCMSLAVSPDFNLFISGACDASAKLWD
WD 5 216-254 GTCRQTFTGHE--SDINAICFFPNGEAICTGSDDASCRLFD
WD 6 258-298 DQELICFSHESIICGITSVAFSLSGRLLFAGYDDFNCNVWD
WD 7 302-340 SERVGILSGHD--NRVSCLGVTADGMAVATGSWDSFLKIWN
WD40 Template GECLRTLSGHT--SGVTSVSFSPDGKRLVSGSEDGTIKVWD