WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000229264    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000229264 (Len=340)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000229264, Len=340):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGEMEQLRQEAEQLKKQIADARKACADVTLAELVSGLEVVGRVQMRTRRTLRGHLAKIYAMHWATDSKLLVSASQDGKLI 80  
WD40-rpts                                                  (_________________WD 1______________

Query       81 VWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNMCSIYNLKSREGNVKVSRELSAHTGYLSCCRFLDDNNIVTS 160 
WD40-rpts      __)   (_________________WD 2________________)       (________________WD 3_______

Query      161 SGDTTCALWDIETGQQKTVFVGHTGDCMSLAVSPDFNLFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNGEA 240 
WD40-rpts      _________)   (_________________WD 4________________)   (_________________WD 5___

Query      241 ICTGSDDASCRLFDLRADQELICFSHESIICGITSVAFSLSGRLLFAGYDDFNCNVWDSMKSERVGILSGHDNRVSCLGV 320 
WD40-rpts      _____________)   (__________________WD 6_________________)   (_________________W

Query      321 TADGMAVATGSWDSFLKIWN 340 
WD40-rpts      D 7________________)



7 WD40-repeats found in QUERY=ENSP00000229264 (Len=340):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    45-83      10.09  531.46  4.3e-06       40.0%     52.70
  WD 2:  Seg  7    87-125      8.73  475.19  2.5e-05       15.0%     56.77
  WD 3:  Seg 11   133-170      7.60  428.59  0.00010       32.5%     48.53
  WD 4:  Seg 15   174-212      9.93  524.96  5.2e-06       35.0%     56.70
  WD 5:  Seg 19   216-254     10.40  544.37  2.9e-06       32.5%     51.34
  WD 6:  Seg 23   258-298      8.26  456.06  4.4e-05       37.5%     57.73
  WD 7:  Seg 27   302-340      9.89  523.30  5.5e-06       32.5%     51.14
Multiple sequence alignment of 7 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   45-83     MRTRRTLRGHL--AKIYAMHWATDSKLLVSASQDGKLIVWD
   WD 2   87-125    TNKVHAIPLRS--SWVMTCAYAPSGNFVACGGLDNMCSIYN
   WD 3  133-170    VKVSRELSAHT--GYLSCCRFLDDNN-IVTSSGDTTCALWD
   WD 4  174-212    GQQKTVFVGHT--GDCMSLAVSPDFNLFISGACDASAKLWD
   WD 5  216-254    GTCRQTFTGHE--SDINAICFFPNGEAICTGSDDASCRLFD
   WD 6  258-298    DQELICFSHESIICGITSVAFSLSGRLLFAGYDDFNCNVWD
   WD 7  302-340    SERVGILSGHD--NRVSCLGVTADGMAVATGSWDSFLKIWN

   WD40 Template    GECLRTLSGHT--SGVTSVSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019