Input parameters:
Query = ENSP00000235090 (Len=342)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000235090, Len=342):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MRKETPPPLVPPAAREWNLPPNAPACMERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTE 80
WD40-rpts (_________________________WD 1________________________) (__________
Query 81 AGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVL 160
WD40-rpts ______WD 2________________) (________________WD 3_______________) (___
Query 161 SSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLV 240
WD40-rpts ______________WD 4_________________)(____________________WD 5___________________
Query 241 DTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDH 320
WD40-rpts ) (_________________WD 6_________________)(__________________WD 7_____________
Query 321 QVVHHVVPTEPLPAPGPASVTE 342
WD40-rpts _____)
7 WD40-repeats found in QUERY=ENSP00000235090 (Len=342):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-55 5.19 329.01 0.00229 12.5% 36.04
WD 2: Seg 5 70-107 6.15 368.63 0.00067 12.5% 48.98
WD 3: Seg 10 117-153 9.08 489.58 1.6e-05 37.5% 43.48
WD 4: Seg 13 157-196 8.49 465.56 3.3e-05 35.0% 54.77
WD 5: Seg 17 197-241 6.71 391.76 0.00033 27.5% 52.74
WD 6: Seg 21 245-284 8.62 470.79 2.8e-05 35.0% 56.62
WD 7: Seg 25 285-326 6.58 386.36 0.00039 17.5% 53.38
Multiple sequence alignment of 7 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-55 MR----KETPPPLVPPAAREWNLPPNAPACMERQLEAARYRSD-G-AL-LLGAS-SLSGRCWA
WD 2 70-107 -E----GFC----------------SAGVQTEAGVADLTWVGE-R-G--ILVASDSGAVELWE
WD 3 117-153 -------SK----------------FCKYEHDDIVSTVSVLSS-G-TQ-AVSGSKDICIKVWD
WD 4 157-196 -Q----VVL----------------SSYRAHAAQVTCVAASPH-K-DSVFLSCSEDNRILLWD
WD 5 197-241 TRCPKPASQ----------------IGCSAPGYLPTSLAWHPQQS-EV-FVFGDENGTVSLVD
WD 6 245-284 -T----SCV----------------LSSAVHSQCVTGLVFSPH-SVPF-LASLSEDCSLAVLD
WD 7 285-326 SS---LSEL----------------FRSQAHRDFVRDATWSPL-N-HSLLTTVGWDHQVVHHV
WD40 Template TG----ECL----------------RTLSGHTSGVTSVSFSPD-G-KR-LVSGSEDGTIKVWD