WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000235090    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000235090 (Len=342)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000235090, Len=342):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRKETPPPLVPPAAREWNLPPNAPACMERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTE 80  
WD40-rpts      (_________________________WD 1________________________)              (__________

Query       81 AGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVL 160 
WD40-rpts      ______WD 2________________)         (________________WD 3_______________)   (___

Query      161 SSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLV 240 
WD40-rpts      ______________WD 4_________________)(____________________WD 5___________________

Query      241 DTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDH 320 
WD40-rpts      )   (_________________WD 6_________________)(__________________WD 7_____________

Query      321 QVVHHVVPTEPLPAPGPASVTE 342 
WD40-rpts      _____)                



7 WD40-repeats found in QUERY=ENSP00000235090 (Len=342):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-55       5.19  329.01  0.00229       12.5%     36.04
  WD 2:  Seg  5    70-107      6.15  368.63  0.00067       12.5%     48.98
  WD 3:  Seg 10   117-153      9.08  489.58  1.6e-05       37.5%     43.48
  WD 4:  Seg 13   157-196      8.49  465.56  3.3e-05       35.0%     54.77
  WD 5:  Seg 17   197-241      6.71  391.76  0.00033       27.5%     52.74
  WD 6:  Seg 21   245-284      8.62  470.79  2.8e-05       35.0%     56.62
  WD 7:  Seg 25   285-326      6.58  386.36  0.00039       17.5%     53.38
Multiple sequence alignment of 7 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    1-55     MR----KETPPPLVPPAAREWNLPPNAPACMERQLEAARYRSD-G-AL-LLGAS-SLSGRCWA
   WD 2   70-107    -E----GFC----------------SAGVQTEAGVADLTWVGE-R-G--ILVASDSGAVELWE
   WD 3  117-153    -------SK----------------FCKYEHDDIVSTVSVLSS-G-TQ-AVSGSKDICIKVWD
   WD 4  157-196    -Q----VVL----------------SSYRAHAAQVTCVAASPH-K-DSVFLSCSEDNRILLWD
   WD 5  197-241    TRCPKPASQ----------------IGCSAPGYLPTSLAWHPQQS-EV-FVFGDENGTVSLVD
   WD 6  245-284    -T----SCV----------------LSSAVHSQCVTGLVFSPH-SVPF-LASLSEDCSLAVLD
   WD 7  285-326    SS---LSEL----------------FRSQAHRDFVRDATWSPL-N-HSLLTTVGWDHQVVHHV

   WD40 Template    TG----ECL----------------RTLSGHTSGVTSVSFSPD-G-KR-LVSGSEDGTIKVWD


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Last modified: 09 Jan 2019