WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000238146    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000238146 (Len=600)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000238146, Len=600):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEHVTEGSWESLPVPLHPQVLGALRELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKK 80  
WD40-rpts                                                  (___________________________________

Query       81 SQVGAIIITPTRELAIQIDEVLSHFTKHFPEFSQILWIGGRNPGEDVERFKQQGGNIIVATPGRLEDMFRRKAEGLDLAS 160 
WD40-rpts      ___________WD 1_____________________________________________)                   

Query      161 CVRSLDVLVLDEADRLLDMGFEASINTILEFLPKQRRTGLFSATQTQEVENLVRAGLRNPVRVSVKEKGVAASSAQKTPS 240 
WD40-rpts                                                                                      

Query      241 RLENYYMVCKADEKFNQLVHFLRNHKQEKHLVFFSTCACVEYYGKALEVLVKGVKIMCIHGKMKYKRNKIFMEFRKLQSG 320 
WD40-rpts                                                                                      

Query      321 ILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLPMEESYINFLAINQKCPLQEMKPQRNT 400 
WD40-rpts                                                                                      

Query      401 ADLLPKLKSMALADRAVFEKGMKAFVSYVQAYAKHECNLIFRLKDLDFASLARGFALLRMPKMPELRGKQFPDFVPVDVN 480 
WD40-rpts                                                                                      

Query      481 TDTIPFKDKIREKQRQKLLEQQRREKTENEGRRKFIKNKAWSKQKAKKEKKKKMNEKRKREEGSDIEDEDMEELLNDTRL 560 
WD40-rpts                                                                                      

Query      561 LKKLKKGKITEEEFEKGLLTTGKRTIKTVDLGISDLEDDC 600 
WD40-rpts                                              



1 WD40-repeats found in QUERY=ENSP00000238146 (Len=600):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    45-141      3.07  241.37  0.03424       20.0%     41.47
Multiple sequence alignment of 1 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   45-141    RNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKKSQVGAIIITPTRELAIQIDEVLSHFTKHFPEFSQILWIGGRNPGEDVERFKQQGGNIIVAT

   WD40 Template    TGECLRTLSGHTS------------------------GVTSVSFSPD---------------------GKRLVSGSED------------GTIKVWD


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Last modified: 09 Jan 2019