WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000239026    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000239026 (Len=310)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000239026, Len=310):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFS 80  
WD40-rpts                                                                                (_____

Query       81 RLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLV 160 
WD40-rpts      ____________________WD 1_________________________)                              

Query      161 TANTIDQKIVERAAAKRKLEKLIIHKNHFKGGQSGLNLSKNFLDPKELMELLKSRDYEREIKGSREKVISDKDLELLLDR 240 
WD40-rpts                                                                                      

Query      241 SDLIDQMNASGPIKEKMGIFKILENSEDSSPELETGFHHLGLTGPELISGDLPTSASQSAGITSVSHCVA 310 
WD40-rpts                                                                            



1 WD40-repeats found in QUERY=ENSP00000239026 (Len=310):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    75-130      2.90  234.25  0.04253       22.5%     28.25
Multiple sequence alignment of 1 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   75-130    RDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINLTAAD-TVIIYD

   WD40 Template    TGECLRTLSGHTS-----------------GVTSVSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019