Input parameters:
Query = ENSP00000241704 (Len=1224)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000241704, Len=1224):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MLTKFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQPLFVSGGDDYKIKVWNY 80
WD40-rpts (________________WD 1_______________) (_________________WD 2________________)
Query 81 KLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVWNWQSRTCVCVLTGHNHYVMCAQFHPTEDLVVSASLDQTVR 160
WD40-rpts (_________________WD 3________________) (_________________WD 4______________
Query 161 VWDISGLRKKNLSPGAVESDVRGITGVDLFGTTDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAW 240
WD40-rpts __) (_________________WD 5________________)(______
Query 241 EVDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLAAHPNLNLFAAGHDGGMIVFKLE 320
WD40-rpts _____________WD 6___________________)(__________________WD 7_________________)
Query 321 RERPAYAVHGNMLHYVKDRFLRQLDFNSSKDVAVMQLRSGSKFPVFNMSYNPAENAVLLCTRASNLENSTYDLYTIPKDA 400
WD40-rpts (____________________WD 8___________________)
Query 401 DSQNPDAPEGKRSSGLTAVWVARNRFAVLDRMHSLLIKNLKNEITKKVQVPNCDEIFYAGTGNLLLRDADSITLFDVQQK 480
WD40-rpts (___
Query 481 RTLASVKISKVKYVIWSADMSHVALLAKHAIVICNRKLDALCNIHENIRVKSGAWDESGVFIYTTSNHIKYAVTTGDHGI 560
WD40-rpts ______________WD 9_________________)
Query 561 IRTLDLPIYVTRVKGNNVYCLDRECRPRVLTIDPTEFKFKLALINRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALH 640
WD40-rpts
Query 641 FVKDEKTRFSLALECGNIEIALEAAKALDDKNCWEKLGEVALLQGNHQIVEMCYQRTKNFDKLSFLYLITGNLEKLRKMM 720
WD40-rpts
Query 721 KIAEIRKDMSGHYQNALYLGDVSERVRILKNCGQKSLAYLTAATHGLDEEAESLKETFDPEKETIPDIDPNAKLLQPPAP 800
WD40-rpts
Query 801 IMPLDTNWPLLTVSKGFFEGTIASKGKGGALAADIDIDTVGTEGWGEDAELQLDEDGFVEATEGLGDDALGKGQEEGGGW 880
WD40-rpts
Query 881 DVEEDLELPPELDISPGAAGGAEDGFFVPPTKGTSPTQIWCNNSQLPVDHILAGSFETAMRLLHDQVGVIQFGPYKQLFL 960
WD40-rpts
Query 961 QTYARGRTTYQALPCLPSMYGYPNRNWKDAGLKNGVPAVGLKLNDLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLV 1040
WD40-rpts
Query 1041 VDNKQEIAEAQQLITICREYIVGLSVETERKKLPKETLEQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFKT 1120
WD40-rpts
Query 1121 AATFARRLLELGPKPEVAQQTRKILSACEKNPTDAYQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGACYSPEFKGQI 1200
WD40-rpts
Query 1201 CRVTTVTEIGKDVIGLRISPLQFR 1224
WD40-rpts
9 WD40-repeats found in QUERY=ENSP00000241704 (Len=1224):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-37 4.97 319.95 0.00303 22.5% 46.91
WD 2: Seg 4 41-79 7.12 408.78 0.00019 27.5% 56.60
WD 3: Seg 8 83-121 8.22 454.01 4.7e-05 35.0% 55.71
WD 4: Seg 12 125-163 8.72 474.96 2.5e-05 37.5% 56.50
WD 5: Seg 19 195-233 8.56 468.43 3.0e-05 32.5% 55.39
WD 6: Seg 23 234-277 8.33 458.62 4.1e-05 37.5% 52.19
WD 7: Seg 27 278-318 3.15 244.80 0.03084 15.0% 57.60
WD 8: Seg 34 346-390 3.28 250.14 0.02618 12.5% 40.96
WD 9: Seg 45 477-516 3.29 250.76 0.02569 15.0% 42.52
Multiple sequence alignment of 9 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-37 --------M----LTKFETKSARVKGLSFHPKRPWILTSLHNGVIQLWD
WD 2 41-79 -CT-----L----IDKFDEHDGPVRGIDFHKQQPLFVSGGDDYKIKVWN
WD 3 83-121 -RR-----C----LFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVWN
WD 4 125-163 -RT-----C----VCVLTGHNHYVMCAQFHPTEDLVVSASLDQTVRVWD
WD 5 195-233 -AV-----V----KHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWR
WD 6 234-277 MNE-----SKAWEVDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWD
WD 7 278-318 MSK---RTG----VQTFRRDHDRFWVLAAHPNLNLFAAGH-DGGMIVFK
WD 8 346-390 FNSSKDVAV----MQLRSGSKFPVFNMSYNPAENAVLLCTRASNLENST
WD 9 477-516 VQQ-----K----RTLASVKISKVKYVIWSADMSHVALLAKHAIVICNR
WD40 Template TGE-----C----LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD