Input parameters:
Query = ENSP00000242796 (Len=315)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000242796, Len=315):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAFPEPKPRPPELPQKRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNS 80
WD40-rpts (_________________WD 1_________________) (_________________WD 2__
Query 81 SLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSIRCWDCRSRRPEPVQTLDEARDGVSSVK 160
WD40-rpts ______________) (_________________WD 3________________) (________________W
Query 161 VSDHEILAGSVDGRVRRYDLRMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYKGHKNQEYKLD 240
WD40-rpts D 4_______________)(_________________WD 5_________________) (_________________
Query 241 CCLSERDTHVVSCSEDGKVFFWDLVEGALALALPVGSGVVQSLAYHPTEPCLLTAMGGSVQCWREEAYEAEDGAG 315
WD40-rpts _WD 6_________________) (________________WD 7________________)
7 WD40-repeats found in QUERY=ENSP00000242796 (Len=315):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 14-53 8.89 481.92 2.0e-05 30.0% 53.01
WD 2: Seg 5 57-95 10.05 529.61 4.5e-06 40.0% 56.95
WD 3: Seg 9 99-137 10.34 541.95 3.1e-06 35.0% 55.22
WD 4: Seg 13 143-179 7.45 422.23 0.00013 32.5% 49.84
WD 5: Seg 17 180-219 7.90 440.89 7.1e-05 25.0% 53.65
WD 6: Seg 21 223-263 8.38 460.66 3.8e-05 35.0% 54.54
WD 7: Seg 25 267-304 7.53 425.80 0.00011 20.0% 51.84
Multiple sequence alignment of 7 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 14-53 PQKRLKTLDCGQGAVRAVR--FNVDGNYCLTCGSDKTLKLWN
WD 2 57-95 -GTLLRTYSGHGYEVLDAA--GSFDNSSLCSGGGDKAVVLWD
WD 3 99-137 -GQVVRKFRGHAGKVNTVQ--FNEEATVILSGSIDSSIRCWD
WD 4 143-179 -PEPVQTLDEARDGVSSVK--VSDH--EILAGSVDGRVRRYD
WD 5 180-219 LRMGQLFSDYVGSPITCTC--FSRDGQCTLVSSLDSTLRLLD
WD 6 223-263 -GELLGEYKGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWD
WD 7 267-304 -GALALALPVGSGVVQSLA--YHPTEPCLLTAM-GGSVQCWR
WD40 Template TGECLRTLSGHTSGVTSVS--FSPDGKRLVSGSEDGTIKVWD