WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000251074    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000251074 (Len=326)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000251074, Len=326):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKQDASRNAAYTVDCEDYVHVVEFNPFENGDSGNLIAYGGNNYVVIGTCTFQEEEADVEGIQYKTLRTFHHGVRVDGIAW 80  
WD40-rpts          (____________________WD 1___________________)          (____________________

Query       81 SPETRLDSLPPVIKFCTSAADMKIRLFTSDLQDKNEYKVLEGHTDFINGLVFDPKEGQEIASVSDDHTCRIWNLEGVQTA 160 
WD40-rpts      __WD 2_____________________)     (_________________WD 3_________________)  (____

Query      161 HFVLHSPGMSVCWHPEETFKLMVAEKNGTIRFYDLLAQQAILSLESEQVPLMSAHWCLKNTFKVGAVAGNDWLIWDITRS 240 
WD40-rpts      _____________WD 4________________)   (_________________WD 5________________)    

Query      241 SYPQNKRPVHMDRACLFRWSTISENLFATTGYPGKMASQFQIHHLGHPQPILMGSVAVGSGLSWHRTLPLCVIGGDHKLL 320 
WD40-rpts         (________________WD 6________________)    (________________WD 7______________

Query      321 FWVTEV 326 
WD40-rpts      __)   



7 WD40-repeats found in QUERY=ENSP00000251074 (Len=326):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     5-49       5.71  350.40  0.00118       15.0%     48.59
  WD 2:  Seg  6    60-108      6.05  364.75  0.00076       15.0%     51.74
  WD 3:  Seg 10   114-153      8.81  478.71  2.2e-05       30.0%     54.37
  WD 4:  Seg 14   156-194      8.50  465.83  3.3e-05       20.0%     54.29
  WD 5:  Seg 18   198-236      8.37  460.47  3.9e-05       12.5%     56.85
  WD 6:  Seg 22   244-281      4.96  319.38  0.00309       10.0%     43.52
  WD 7:  Seg 25   286-323      6.13  367.82  0.00069       17.5%     49.60
Multiple sequence alignment of 7 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    5-49     ASRNAA-YTVDCEDYVHVVEFNPFENGDSGN--------LI--AYGGNNYVVIGTC
   WD 2   60-108    GIQYKTLRTFHHGVRVDGIAWSP-----ETRLDSLPPVIKF--CTSAADMKIRLFT
   WD 3  114-153    -KNEYK-VLEGHTDFINGLVFDP----KEGQ--------EI--ASVSDDHTCRIWN
   WD 4  156-194    -GVQTA-HFVLHSPGMSVCWHPE-----ETF--------KL--MVAEKNGTIRFYD
   WD 5  198-236    -QQAIL-SLESEQVPLMSAHWCL-----KNT--------FK--VGAVAGNDWLIWD
   WD 6  244-281    ----QN-KRPVHMDRACLFRWST-----ISE--------NLFATTGYPGKMASQFQ
   WD 7  286-323    -GHPQP-ILMGSVAVGSGLSWHR-----TLP---------L--CVIGGDHKLLFWV

   WD40 Template    TGECLR-TLSGHTSGVTSVSFSP-----DGK--------RL--VSGSEDGTIKVWD


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Last modified: 09 Jan 2019